Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme194741g00001 CTGTGTGATTTCGGATTAGCAACATGGACATCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTTAAAGGAACATTTGGATATTTGGCTCCAGAGTATTTCCAACATGGGAAAATATCCGATAAGACTGATGTTTATGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGCCGGAAACCAATTGAACCGAAAAGGTCTCCAGGAGAGGAGAATTTAGTCTTATGGGTGAGTTAA 237 0.4008 MCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKISDKTDVYAFGVVLLELITGRKPIEPKRSPGEENLVLWVS 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme194741g00001 78 Gene3D Transferase(Phosphotransferase) domain 1 1 78 - -
Trme194741g00001 78 Pfam Protein kinase domain 1 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme194741g00001 78 ProSiteProfiles Protein kinase domain profile. 1 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme194741g00001 78 SUPERFAMILY Protein kinase-like (PK-like) 2 66 IPR011009 -
Trme194741g00001 78 PANTHER OS08G0249100 PROTEIN 1 77 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme194741g00001 Trme-Chr194741 59 386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme194741g00001 1 76 Trihelix Transcription Factor Family AT1G70460 55.263 9.41e-23 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme194741g00001 Pkinase 9.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme194741g00001 - - psat:127083811 158.688