Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19470g00001 ATGTTATACGTGACCCAATATAATCACGGCATACTTATTGCAGCTGTTCAAGGAGATTATTTTGTGGCCATCAATATAGGATTTGAGAATTCAGCTGGACCTCAGAAACATCAAGCAGTAGCCATAAGGGTTCAAGCAGACAAAACAATCTTTTATAGATGTTCAATGGATGGATATCAAGACACATTATATACTCACGCCTTGCGTCAATATTATCGCGAATGTACAATTTCAGGCACCATTGATTTTGTATTTGGTGATGCAATAGCTGTTTTCCAAAATTGCACTTTCATTGTAAGAAAACCATTACAAAACCAACAATGCATTGTAACTGCACAAGGCAGGAAAGAGATCCACCAACCATCTGGAATAGTTATTCAAGATTGCTACATTGTGCCTGAAAGTCAAAATGTAACACTCGAACACAAAACATATCTTGCGCGTCCGTGGAAGAATTTCTCAAGGACTGTCTTCATGAAAACTTACTTTGGTGATTTGATTCAACCTGATGGGTATATGCCATGGCAAGGACCAAATGGTACTCTTACTGGAATGAATACTTGCTTTTATGCTGAGTACGATAATATTGGCCCCGGTTCAGATAAATCAAAACGCGTAAAATGGCCCGGAGTTAAGGTTCTTAATTCAAAGTCTGCAAGTAATTTTTTACCATCTATGTTCTTTCATGGAGATGATTGGATTAAGGTTACTAGAATTCCTTACTCTTCTGGTGAGAAACCCCCCAAGCACTAA 753 0.3811 MLYVTQYNHGILIAAVQGDYFVAINIGFENSAGPQKHQAVAIRVQADKTIFYRCSMDGYQDTLYTHALRQYYRECTISGTIDFVFGDAIAVFQNCTFIVRKPLQNQQCIVTAQGRKEIHQPSGIVIQDCYIVPESQNVTLEHKTYLARPWKNFSRTVFMKTYFGDLIQPDGYMPWQGPNGTLTGMNTCFYAEYDNIGPGSDKSKRVKWPGVKVLNSKSASNFLPSMFFHGDDWIKVTRIPYSSGEKPPKH 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19470g00001 250 ProSitePatterns Pectinesterase signature 2. 77 86 IPR033131 -
Trme19470g00001 250 FunFam Pectinesterase 4 5 245 - -
Trme19470g00001 250 PANTHER PECTINESTERASE 15 235 - -
Trme19470g00001 250 Pfam Pectinesterase 15 231 IPR000070 GO:0030599|GO:0042545
Trme19470g00001 250 Gene3D - 5 246 IPR012334 -
Trme19470g00001 250 SUPERFAMILY Pectin lyase-like 13 243 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19470g00001 Trme-Chr19470 617 1369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19470g00001 15 241 Carbohydrate Esterase AT5G49180 52.402 1.70e-91 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19470g00001 K01051 - gmx:100810853 372.089