Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme194612g00001 ATGGCAGGTTTATTTTCATTAGGAAGAAGCGAAGAACAAAATCAACAGAATAATAATAACAATAATCCAGTAACTGAATTCTGGTATAATAACAAAAATGAAGATTCGGTTTCTGCATACCGTGGTGGTTTTGAGATTTGGAACGAACAGCCACCTCATCATCAACAACAGTTTTTTCCTCCGCAGCAAGATCTTTACGCCGCCTCTGCTGGTGTTGTGTTAGGAGTTGGGCCGAGTAGGGTTTGTTCTTCAGATGAGAATAGATCTGCGGTGTTTGTGGCGTCAGGAAGTGGTGGAGGGATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATGTTAGATGTAGGACTTGTTGTAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAA 404 0.4035 MAGLFSLGRSEEQNQQNNNNNNPVTEFWYNNKNEDSVSAYRGGFEIWNEQPPHHQQQFFPPQQDLYAASAGVVLGVGPSRVCSSDENRSAVFVASGSGGGISCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHV 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme194612g00001 134 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 134 IPR007818 GO:0003700|GO:0006355
Trme194612g00001 134 MobiDBLite consensus disorder prediction 1 26 - -
Trme194612g00001 134 NCBIfam putative zinc finger domain, LRP1 type 102 134 IPR006510 -
Trme194612g00001 134 MobiDBLite consensus disorder prediction 8 26 - -
Trme194612g00001 134 Pfam Domain of unknown function (DUF702) 100 134 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme194612g00001 1 134 C2H2 Transcription Factor Family AT5G66350 45.062 3.02e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trme194612g00001 DUF702 5.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme194612g00001 - - gmx:100814589 144.05