Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme194600g00001 ATTCGTGCGATTGAGCTAAAGAATCATTCTACCTTGAATGGAAAGGCGATAAGGGTTATGTGGTCGCGACGTGATCCCGATGCAAGGAAAAGTAGCATAGGGAACGTGTTTGTTAAGAATTTAGCTGAATCGATAAATAATTCTGGACTAGAAGATATGTTTAAAAAGTTTGGGAATATTTTGTCAAGCAAAGTTGTAATGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAAACAGAGGAATCTGCAAATACTGCTATC 273 0.381 IRAIELKNHSTLNGKAIRVMWSRRDPDARKSSIGNVFVKNLAESINNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANTAI 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme194600g00001 91 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 91 IPR000504 GO:0003723
Trme194600g00001 91 Gene3D - 23 87 IPR012677 -
Trme194600g00001 91 PANTHER RNA BINDING PROTEIN 3 91 - -
Trme194600g00001 91 SMART rrm1_1 35 91 IPR000504 GO:0003723
Trme194600g00001 91 SUPERFAMILY RNA-binding domain, RBD 2 91 IPR035979 GO:0003676
Trme194600g00001 91 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme194600g00001 Trme-Chr194600 86 450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme194600g00001 3 91 Eukaryotic Initiation Factors Gene Family AT2G36660 69.663 1.38e-38 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme194600g00001 K13126 - gmx:100804671 161.384