Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19451g00001 ATGAGAATGGAATACCTAAAATCAGTCTTAAGACAAGAAGTTGGTTTCTTTGACACTCAAACTGCTGGTTCTTCAACAACATACCAAGTTGTCTCCCTCATTTCCTCAGATGCAAATACAGTCCAATCTGCCTTGTCTGAGAAGATACCAGATTGCTTGACTTATGTGTCAGCATTCTTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTGCATTGGCAGCAATACCACTCTCTGTCATGTTCATTGTCCCGGCACTTGTATTCGGGAAGATGATGTTGGATGTCACAATGAAAATGATAGAATCTTATGGTGTCGCTGGTGGGATTGCAGAGCAAGCAATATCTTCAATAAGAACTGTTTTCTCTTATGTTGGGGAGAATCAAACACTAAAAAGATTTAGCACTGCACTTCAAAAAACTATGGAGCTTGGAATAAAGCAAGGATTTGCAAAGGGGTTGATGTTAGGAAGTATGGGAGTTATTTATGTAAGTTGGGGTTTTCAAGCTTGGGTTGGAACGTTTTTGATATCTGAAAAAGGAGAGAAAGGTGGCCATGTATTTGTAGCTGGCTTCAACATCCTAATGGGAGGACT 602 0.3987 MRMEYLKSVLRQEVGFFDTQTAGSSTTYQVVSLISSDANTVQSALSEKIPDCLTYVSAFLFCHIFAFVLSWRLALAAIPLSVMFIVPALVFGKMMLDVTMKMIESYGVAGGIAEQAISSIRTVFSYVGENQTLKRFSTALQKTMELGIKQGFAKGLMLGSMGVIYVSWGFQAWVGTFLISEKGEKGGHVFVAGFNILMGGL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19451g00001 201 Gene3D ABC transporter type 1, transmembrane domain 1 201 IPR036640 GO:0005524|GO:0016020
Trme19451g00001 201 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme19451g00001 201 SUPERFAMILY ABC transporter transmembrane region 1 191 IPR036640 GO:0005524|GO:0016020
Trme19451g00001 201 Pfam ABC transporter transmembrane region 1 200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme19451g00001 201 PANTHER ABC TRANSPORTER B FAMILY 1 201 IPR039421 -
Trme19451g00001 201 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19451g00001 Trme-Chr19451 79 1187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19451g00001 1 201 Calmodulin-binding Proteins AT2G36910 33.168 8.44e-29 110