Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme194289g00001 ATGCGTGCAAGACAATCCCGAAGGATTGTGGAAAGGGGTCATTACACTGAAAGAAAAGCAGCTAAACTTGCTAGGACTATTGTTAGTGTTGTTGAAGCATGTCACTCACTTGGTGTAATGCATCGCGATCTTAAGCCTGAGAATTTTCTTTTTGTTGATGGACATGAAGACTCTACTCTTAAGGCAATTGATTTTGGAATGTCTGTTTTCTTCAAACCAG 220 0.4 MRARQSRRIVERGHYTERKAAKLARTIVSVVEACHSLGVMHRDLKPENFLFVDGHEDSTLKAIDFGMSVFFKP 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme194289g00001 73 Gene3D Transferase(Phosphotransferase) domain 1 7 71 - -
Trme194289g00001 73 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672|GO:0006468
Trme194289g00001 73 SUPERFAMILY Protein kinase-like (PK-like) 8 71 IPR011009 -
Trme194289g00001 73 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 72 - -
Trme194289g00001 73 Pfam Protein kinase domain 7 71 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme194289g00001 73 ProSiteProfiles Protein kinase domain profile. 1 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme194289g00001 Trme-Chr194289 10 396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme194289g00001 8 73 EF-hand Containing Proteins AT5G04870 83.333 6.65e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme194289g00001 Pkinase 1.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme194289g00001 K13412 - gmx:100814475 127.872