Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19425g00001 ATGAAGATGTCCATTCTGTTTGGTGTGGTGCATATGAACTTAGGAATTATGTTAAGTTACTTCAATGCTCGTTTCTTTGGCAGTTCACTGGATATAAGGTATCAGTTTGTGCCGCAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTTTATCATATAATGATTTACATGTTTTTAAGCCCCTTTGACAAGCTTGGTGAGAATGAGTTGTTCTGGGGCCAAAGGCCACTTCAAATTTTGTTATTGCTTCTGGCTCTAATTGCAGTTCCATGGATGCTCTTTCCAAAGCCTTTTATATTAAAGAAACTTCATAATGAGAGATTTCAAGGACGCAATTACGGTGTTCTTAATACCTCTGAGATAGATCTTGAGGTGGAACCGGATTCTGCCAGGGCCATGCAACATCATGATGAATTTAATTTCAGTGAGGTCTTTGTTCATCAAATGATTCACTCCATTGACTTGGCTCACTCAGAGCTTTCAACTGTTTTTTATGAGAAAGTCCTGCTACTAGCATGGGG 569 0.3972 MKMSILFGVVHMNLGIMLSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHIMIYMFLSPFDKLGENELFWGQRPLQILLLLLALIAVPWMLFPKPFILKKLHNERFQGRNYGVLNTSEIDLEVEPDSARAMQHHDEFNFSEVFVHQMIHSIDLAHSELSTVFYEKVLLLAWG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19425g00001 190 PANTHER VACUOLAR PROTON ATPASES 1 180 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trme19425g00001 190 Pfam V-type ATPase 116kDa subunit family 1 171 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19425g00001 Trme-Chr19425 29 1300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19425g00001 1 190 Primary Pumps ATPases(2) AT2G28520 75.238 7.98e-109 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19425g00001 K02154 - gmx:100800799 335.88