LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme19414g00001	ATGACAGTTGAGGCTGAAAGAGTCGGTGCTTTTAGTTGGTACATGCATGATTTGTGGTTGGTAGTTTTGCAAGTTACATTGGCATTATTGATTCTATATAAAAACTTGGGACTTGCTTCAATTGCTGCTTTTGTCACAACCATCATTGTTATGTTGGCAAATGTTCCATTGGGATCATGGCTAGAGAAGTCTCAGAATAACTTGATGGAGTCAAAGGATACAAGAATGAAGGCAACATCTGAAATTTTAAGAAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAATTTCTATCTCAAATAACCATGACTACAATTGTCTTTTGGGGTGCTCCTACGTTGATATCTGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATTCTATCAGCACTTGCAACATTCGGGATTCTTCAAGAGCCGATTTATAATCTTCCAGATGTGATTTCAATGATAGCACAAACTAAAGTTTCTCTAGATAGGATCACGTCGTTCCTTTGTCTCGATGACTTGCAATCCAATGTTGTTGAAAAGCTTCCTCCAGGAAGTTCTGATACCGCAATTGAAGTGGTTGATGGGAACTTTTCTTGGGATTTATCTTCACCTAGTCCAAATTTGCAGAATATAAATCTTAAAGTTTTTCATGGCATGAAGGTTGCTGTTTGTGGTACCGTTGGGTCAGGCAAGTCTACTCTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCCGGTGTCCTTAAGGTTTGTAGAACAAAGGCTTATGTTGCTCAATCTCCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAACACATGGTTAGGGAAGGGTATGAGAAGGTACTTGAAGCATGTTCCTTAAAGAAGGATCTTGAAATCTTGTCATTTGGTGATCAAACGGTTATAGGCGAACATGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGCGCTCTTTACCAAGATGCT	1017	0.3874	MTVEAERVGAFSWYMHDLWLVVLQVTLALLILYKNLGLASIAAFVTTIIVMLANVPLGSWLEKSQNNLMESKDTRMKATSEILRNMRILKLQGWEMKFLSQITMTTIVFWGAPTLISVVTFGTCMLIGIPLESGKILSALATFGILQEPIYNLPDVISMIAQTKVSLDRITSFLCLDDLQSNVVEKLPPGSSDTAIEVVDGNFSWDLSSPSPNLQNINLKVFHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCRTKAYVAQSPWIQSGKIEDNILFGEHMVREGYEKVLEACSLKKDLEILSFGDQTVIGEHGINLSGGQKQRIQIARALYQDA	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme19414g00001	339	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	1	162	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Trme19414g00001	339	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	1	339	-	-
	Trme19414g00001	339	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	193	338	IPR027417	-
	Trme19414g00001	339	Coils	Coil	61	81	-	-
	Trme19414g00001	339	CDD	ABC_6TM_ABCC_D1	1	170	IPR044746	GO:0140359
	Trme19414g00001	339	Gene3D	ABC transporter type 1, transmembrane domain	1	177	IPR036640	GO:0005524\|GO:0016020
	Trme19414g00001	339	Gene3D	-	178	339	IPR027417	-
	Trme19414g00001	339	SUPERFAMILY	ABC transporter transmembrane region	10	174	IPR036640	GO:0005524\|GO:0016020
	Trme19414g00001	339	Pfam	ABC transporter transmembrane region	1	103	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Trme19414g00001	339	FunFam	Uncharacterized protein	171	324	-	-
	Trme19414g00001	339	Pfam	ABC transporter	214	338	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme19414g00001	Trme-Chr19414	1	1017	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme19414g00001	206	339	Calmodulin-binding Proteins	AT2G36910	34.416	7.65e-13	67.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme19414g00001	-		K05666	gmx:100794567	586.26