Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19402g00001 ATGTTCACATCAAGGAAGAAAATCAGCAAGGATAAGGGTGCCGAGCCAACTGAATTTGAGGAGTCGGTTGGACAGGCTTTGTTTGATCTAGAAAATACCAACCATGAGTTGAAAAGTGAGCTCAAAGATTTATACATAAACTCAGCAGTCCAAATCGATGTTTCTGGCAACCGTAAGGCTGTGCTTATCCAAGTCCCCTACAGATTAAGGAAGGGTTTCCGCAAAATCCATGNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGCGGCAAGGACGTAATCATTATTGCCACCAGGAGGATTGTTCGTCCTCCAAAGAAAGGTTCAGCTGCTCAGCGCCCCCGCAGCCGTACACTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCTGAGATTGTTGGCAAGCGCACTCGTTACCGAATTGATGGATCAAAGATCATGAAGGTGTTTTTGGACCCAAAGGAGCGTAACTCAACCGAGTACAAGTTGGAGACATTTGCT 513 0.3938 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQIDVSGNRKAVLIQVPYRLRKGFRKIHXXXXXXXXXXXSGKDVIIIATRRIVRPPKKGSAAQRPRSRTLXXXXXXXXXXXXXXAEIVGKRTRYRIDGSKIMKVFLDPKERNSTEYKLETFA 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19402g00001 171 Pfam Ribosomal protein S7e 7 171 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trme19402g00001 171 Coils Coil 27 47 - -
Trme19402g00001 171 PANTHER 40S RIBOSOMAL PROTEIN S7 1 170 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19402g00001 Trme-Chr19402 1 1095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19402g00001 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 65.497 8.93e-80 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19402g00001 K02993 - gmx:100527642 251.906