Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19397g00001 TGGCATTCTGTTATGCAGATCGGGCAAGGAACTTATAGTACTGTTTATAAGGCACGTGACGTGACTAATCAAAAGATTGTTGCATTGAAGAAGGTGCGGTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATACATATTCTGCGACTTGTATCAAATCCGAATATCAAATTCTCTGAACCACAGCTGAAATGCTACATGCATCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATCGACAATAATGGTGTTTTAAAGATTGCCGATTTTGGTTTGGCAAATGTTTTTGACTCCCATCACAATATTCCATTGACTAGCCGTGTAGTAACTCTGTGGTACAGACCACCTGAACTTTTACTTGGAGCGAATCATTATGGGGTTGCAGTGGATTTATGGAGCACTGGTTGTATACTGGGGGAACTATATACAGGCCGGCCCATTTTGCCTGGAAAAACTGAGGTATGA 522 0.4138 WHSVMQIGQGTYSTVYKARDVTNQKIVALKKVRFDNLDPESVKFMAREIHILRLVSNPNIKFSEPQLKCYMHQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLANVFDSHHNIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19397g00001 173 SUPERFAMILY Protein kinase-like (PK-like) 5 172 IPR011009 -
Trme19397g00001 173 ProSitePatterns Protein kinases ATP-binding region signature. 7 30 IPR017441 GO:0005524
Trme19397g00001 173 ProSiteProfiles Protein kinase domain profile. 1 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19397g00001 173 PANTHER CELL DIVISION PROTEIN KINASE 4 60 - -
Trme19397g00001 173 Pfam Protein kinase domain 60 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19397g00001 173 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Trme19397g00001 173 Gene3D Phosphorylase Kinase; domain 1 1 60 - -
Trme19397g00001 173 Gene3D Transferase(Phosphotransferase) domain 1 61 173 - -
Trme19397g00001 173 SMART serkin_6 1 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19397g00001 173 FunFam Mitogen-activated protein kinase 48 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19397g00001 Trme-Chr19397 1 976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19397g00001 1 172 Core Cell Cycle Gene Families AT5G10270 45.495 6.88e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme19397g00001 Pkinase 1.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19397g00001 - - gmx:100807590 310.457