Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1937g00001 ATGAGGACGTTTGGCCCAGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGTTCCAGCAAGGATTATACAAATAGTATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGATTACAAGGCTATTGTACATAGTCCTAATGCATTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGTGGTTGGAGCCGTGCAGATGTTATTGGCAAATTGTTGGTGGGAGAGGTTTTTGGTAGTTTCTGTCAGTTGAAGGGTTCAGATTCTATGACAAAATTCATGATTGTCTTGCACAATGCACTTGGTGGACAAGACACGGACAAATTCCCATTTTCATTTCTTGACCGGCATGGAAAGTATGTGCAGACTTTCTTGACCGCAAATAAAAGGGTTAACAATGATGGTCAGATCATCGGCGCTTTTTGCTTTGTACAAATTGTGAGCCCTGAACTTCAACAGGCTCTGACAGTCCAGAGACAACAGGATACTAGTAGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACATGCTTGACTGATGAGCAAAAGCAGTTACTTGAGACTAGTGCTGCTTGCGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTGGAAAGCGTCGAGGATGGGTCCCTGGAGCTTGAGAAGCAGGAATTCTTGCTCGAGAATGTCATAAATGCAGTAGTTAGCCAAGTAATGTTATTACTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTCTATGGTGATCAATTGAGGATTCAACAAGTCTTGGCTGATTTCTTAATGAATGTGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTGTTTCCAAGAATAAAACAAATTTCAGACGGGCTCWCTATTCTGCATGCTGAGTTTAG 1073 0.4054 MRTFGPGNQNKAVFIVVNACSSKDYTNSIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIGKLLVGEVFGSFCQLKGSDSMTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNNDGQIIGAFCFVQIVSPELQQALTVQRQQDTSSFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIDLESVEDGSLELEKQEFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLXILHAEF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1937g00001 357 ProSiteProfiles Histidine kinase domain profile. 203 357 IPR005467 -
Trme1937g00001 357 Gene3D PAS domain 68 178 - -
Trme1937g00001 357 SMART HisKA_10 196 260 IPR003661 GO:0000155|GO:0007165
Trme1937g00001 357 Gene3D - 179 258 - -
Trme1937g00001 357 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 253 339 IPR036890 -
Trme1937g00001 357 PRINTS Phytochrome signature 37 57 IPR001294 GO:0006355|GO:0009584
Trme1937g00001 357 PRINTS Phytochrome signature 17 34 IPR001294 GO:0006355|GO:0009584
Trme1937g00001 357 FunFam Phytochrome 68 176 - -
Trme1937g00001 357 CDD HisKA 196 252 IPR003661 GO:0000155|GO:0007165
Trme1937g00001 357 PANTHER OS08G0260000 PROTEIN 8 258 - -
Trme1937g00001 357 SUPERFAMILY PYP-like sensor domain (PAS domain) 69 173 IPR035965 -
Trme1937g00001 357 Pfam His Kinase A (phospho-acceptor) domain 200 259 IPR003661 GO:0000155|GO:0007165
Trme1937g00001 357 Gene3D - 259 349 IPR036890 -
Trme1937g00001 357 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 196 252 IPR036097 GO:0000155|GO:0007165
Trme1937g00001 357 FunFam Phytochrome 177 258 - -
Trme1937g00001 357 Pfam PAS fold 55 174 IPR013767 GO:0006355
Trme1937g00001 357 ProSiteProfiles PAS repeat profile. 55 107 IPR000014 -
Trme1937g00001 357 CDD PAS 66 174 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1937g00001 Trme-Chr1937 442 2592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1937g00001 1 357 Histidine Kinase Gene Family AT2G18790 70.868 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1937g00001 K12121 - gmx:100794865 643.654