Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme193350g00001 ATGGATGAAATAAAGATTCTTAAACAAATTGCTGAAGGGGATCTAGAGGACAAGAAATGTGTTGTGAAGCTTTTGGACCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGYTTTTGAATTCCTTGGTGATAATCTTCTCACACTTATCAAGTATAGTGATTATYGTGGKGTTCCCCTTTCCATGGTCAAAGAAATTTGTTACCATGTTTTGGTCGGTTTGGATTATTTGCATCGCCAGCTTTCTATAATACACACTGATTTGAAGCCGGAGAATGTCTTGCTTATCTCTCCAATTGATCCATCTAAGGATCCTAGAAAATCAGGAGTCCCACTTGTACTTCCAAACACCAAGGGCAAGACTGTGTCCAAGAATGGGACCACA 393 0.3995 MDEIKILKQIAEGDLEDKKCVVKLLDHFKHSGPNGQHVCMXFEFLGDNLLTLIKYSDYXGVPLSMVKEICYHVLVGLDYLHRQLSIIHTDLKPENVLLISPIDPSKDPRKSGVPLVLPNTKGKTVSKNGTT 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme193350g00001 131 Gene3D Phosphorylase Kinase; domain 1 1 40 - -
Trme193350g00001 131 MobiDBLite consensus disorder prediction 102 131 - -
Trme193350g00001 131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Trme193350g00001 131 Pfam Protein kinase domain 2 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme193350g00001 131 ProSiteProfiles Protein kinase domain profile. 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme193350g00001 131 Gene3D Transferase(Phosphotransferase) domain 1 41 129 - -
Trme193350g00001 131 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 1 126 - -
Trme193350g00001 131 SUPERFAMILY Protein kinase-like (PK-like) 2 99 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme193350g00001 Trme-Chr193350 1 393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme193350g00001 1 125 EF-hand Containing Proteins AT5G22840 81.600 1.08e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trme193350g00001 Pkinase 1.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme193350g00001 K08832 - gmx:100791829 246.128