Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme193273g00001 GTCATTTTTGAACAGGAGCTCGGTATTACCGCACTTCACATCAAGCTACGTGCTACTGGTGGAAACAAGACCAAAACACCTGGCCCAGGTGCTCAAGCTGCTCTCCGTGCCCTTGCTCGTTCTGGAATGAAAATTGGCCGTATAGGTATTTGA 153 0.4902 VIFEQELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIGI 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme193273g00001 50 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 5 48 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trme193273g00001 50 Pfam Ribosomal protein S11 6 48 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trme193273g00001 50 SUPERFAMILY Translational machinery components 5 48 - -
Trme193273g00001 50 Gene3D Ribosomal protein S11 4 49 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme193273g00001 Trme-Chr193273 165 317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme193273g00001 5 48 Cytoplasmic Ribosomal Protein Gene Family AT2G36160 90.909 6.47e-24 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme193273g00001 K02955 - qsu:112027012 82.0333