Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme193230g00001 ATGTGGCATTTAACGATTGGTGGTGGTGAATCTTACCCTGAACGACATGGTGTGCCTAATTGTGCTTATTATATGCGAACTGGGTTCTGTGGATATGGTGGAAGGTGTCGATTCAATCATCCGCGTGATCGTGCTGCG 138 0.471 MWHLTIGGGESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAA 46
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme193230g00001 46 ProSiteProfiles Zinc finger C3H1-type profile. 15 43 IPR000571 GO:0046872
Trme193230g00001 46 SMART c3hfinal6 15 42 IPR000571 GO:0046872
Trme193230g00001 46 SUPERFAMILY CCCH zinc finger 17 43 IPR036855 GO:0046872
Trme193230g00001 46 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 18 42 IPR000571 GO:0046872
Trme193230g00001 46 PANTHER PROTEIN PHOSPHATASE RELATED 10 44 - -
Trme193230g00001 46 Gene3D - 8 46 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme193230g00001 12 46 C2H2 Transcription Factor Family AT5G16540 54.286 1.15e-09 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme193230g00001 zf-CCCH 1.2e-10 CL0537