Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme192707g00001 ATTGGCCAGGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTTGAAGGCTTGGTTACATCAAGGATGTCGTGCAGTTTATACCTTGTGTTTGAGTACATGGAACATGACTTGGCCGGGCTTGCATCACATCCTGGACTCAAGTTTACAGAATCACAG 285 0.407 IGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTESQ 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme192707g00001 95 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Trme192707g00001 95 SUPERFAMILY Protein kinase-like (PK-like) 1 94 IPR011009 -
Trme192707g00001 95 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme192707g00001 95 PANTHER CELL DIVISION PROTEIN KINASE 1 86 - -
Trme192707g00001 95 FunFam probable serine/threonine-protein kinase At1g54610 1 77 - -
Trme192707g00001 95 Pfam Protein kinase domain 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme192707g00001 95 ProSitePatterns Protein kinases ATP-binding region signature. 1 24 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme192707g00001 Trme-Chr192707 97 381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme192707g00001 1 95 Core Cell Cycle Gene Families AT5G10270 47.273 1.72e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme192707g00001 Pkinase 1.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme192707g00001 - - gmx:100792173 189.889