Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme192589g00001 GTGTATAGGGGTGTGAGGAGGAGGAACAATGATAAATGGGTGTGTGAAATGAGGGAGCCTAATAAAAAGACTAAGATTTGGCTAGGGACTTTTCCAACGGTCGAGATGGCAGCCCGAGCCCATGATGTTGCCGCAATGGCATTAAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCAGTGTGGCGGCTCCCTAAACCTGCCACCGCTCAAGCAAAAGATATACAAAAKGCAGCTACACTAGCCGCCGAGGCATTCAGGCCAAAGAAGACTTTATTGCCTAATGACAATGACATGACTGTAGTTGTCGCCGCCACTGAGGAACAACCTATGCTTTGTAGGGAAGAAGAAGAAGAGGAAGTGATGAACATGCCAGAATTGATGAGTAATATGGCGCTAATGTCTTCTGTGCATAGCTTGGAGAACTCATTCTATGAAGAAGCAGAGTTGTGG 453 0.4768 VYRGVRRRNNDKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSVWRLPKPATAQAKDIQXAATLAAEAFRPKKTLLPNDNDMTVVVAATEEQPMLCREEEEEEVMNMPELMSNMALMSSVHSLENSFYEEAELW 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme192589g00001 151 CDD AP2 2 60 IPR001471 GO:0003700|GO:0006355
Trme192589g00001 151 Gene3D AP2/ERF domain 1 59 IPR036955 GO:0003700|GO:0006355
Trme192589g00001 151 PRINTS Ethylene responsive element binding protein signature 24 40 IPR001471 GO:0003700|GO:0006355
Trme192589g00001 151 PRINTS Ethylene responsive element binding protein signature 2 13 IPR001471 GO:0003700|GO:0006355
Trme192589g00001 151 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 138 IPR045277 GO:0003700
Trme192589g00001 151 Pfam AP2 domain 1 50 IPR001471 GO:0003700|GO:0006355
Trme192589g00001 151 SUPERFAMILY DNA-binding domain 1 60 IPR016177 GO:0003677
Trme192589g00001 151 FunFam Ethylene-responsive transcription factor 2 1 59 - -
Trme192589g00001 151 SMART rav1_2 1 64 IPR001471 GO:0003700|GO:0006355
Trme192589g00001 151 ProSiteProfiles AP2/ERF domain profile. 1 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme192589g00001 Trme-Chr192589 2 454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme192589g00001 1 132 AP2-EREBP Transcription Factor Family AT4G25470 57.246 5.47e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme192589g00001 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme192589g00001 - - mtr:25497250 206.068