Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19253g00001 GTATCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGAGCAGTGACTTCACCTCAACGTCTCTGCATTGTGACGGAGTTTCTCCCACGTGGAAGCTTGTGTCGCTTGTTACATAGAAACACGCCCAAACTTGACTGGAGACGGCGAGTTCATATGGCTTTGGATATTGCACGAGGCGTAAATTATCTTCATCATTATAACCCGCCTATCATTCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAACGAACCGTCAGATGAGAAGTGTGTTCAATCTACCCCCCTTAATTACTATCTCTTCCGACACATGTTTTAA 450 0.4267 VSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGVNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKCVQSTPLNYYLFRHMF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19253g00001 149 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 129 - -
Trme19253g00001 149 SMART serkin_6 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19253g00001 149 Pfam Protein tyrosine and serine/threonine kinase 2 128 IPR001245 GO:0004672|GO:0006468
Trme19253g00001 149 SUPERFAMILY Protein kinase-like (PK-like) 2 133 IPR011009 -
Trme19253g00001 149 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Trme19253g00001 149 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Trme19253g00001 149 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19253g00001 Trme-Chr19253 164 1363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19253g00001 1 133 MAP Kinase Kinase Kinase AT5G49470 89.474 1.30e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trme19253g00001 PK_Tyr_Ser-Thr 8.3e-36 CL0016