Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme191920g00001 ATGACCATAGTGAATTTGTACCTGATAACATTCCTTGCTGTTGTAGAGCTTCATAAGAAAGAGACATGTGAAGCAGTCACTATCATCGAAACTCCTCCAGTTGTTGTTGTTGGAGTGGTGGGATATGTGAAGACACCACGAGGCCTTCGC 150 0.44 MTIVNLYLITFLAVVELHKKETCEAVTIIETPPVVVVGVVGYVKTPRGLR 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme191920g00001 50 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 17 50 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trme191920g00001 50 Pfam Ribosomal protein L3 14 50 IPR000597 GO:0003735|GO:0005840|GO:0006412
Trme191920g00001 50 Gene3D Translation factors 2 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme191920g00001 Trme-Chr191920 1 150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme191920g00001 16 50 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 94.286 7.04e-11 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme191920g00001 K02925 - ghi:107952309 49.2914