Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19187g00001 TCTGAGGATAGAAGGATGAGATTCAGTTGGGAAGCAAGGAGGAATATATCAATTGGTGTGGCTTGTGGAGTTTCCTATCTCCATGAGGAGTTGAAGCCTCATATAGTACACAGAGACATCAAAGCCAAAAATATACTCATTGACAGAAATTTTACACCAAAAGTTTCAGATTTTGGTTTGGCCAAATTAATGAGAGATGAAACATCTTACATTAGCACTAGAGTTGCAGGGACATTGGGTTATTTGGCTCCAGAATATGCTAGTTCWGGACAACTAAGAAGAAAATCAGATGTTTATAGCTTTGGAGTATTGCTTTTACAAATTGTCACTGGCTTGGCTGTTGTAGATGCTTATACAGATATTGAACGTTTCATTGTAGAAAAGGTATGA 390 0.3718 SEDRRMRFSWEARRNISIGVACGVSYLHEELKPHIVHRDIKAKNILIDRNFTPKVSDFGLAKLMRDETSYISTRVAGTLGYLAPEYASSGQLRRKSDVYSFGVLLLQIVTGLAVVDAYTDIERFIVEKV 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19187g00001 129 ProSitePatterns Serine/Threonine protein kinases active-site signature. 35 47 IPR008271 GO:0004672|GO:0006468
Trme19187g00001 129 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19187g00001 129 Pfam Protein kinase domain 4 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19187g00001 129 SMART tyrkin_6 1 129 IPR020635 GO:0004713|GO:0006468
Trme19187g00001 129 FunFam Os07g0541700 protein 1 78 - -
Trme19187g00001 129 Gene3D Transferase(Phosphotransferase) domain 1 1 128 - -
Trme19187g00001 129 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 117 - -
Trme19187g00001 129 SUPERFAMILY Protein kinase-like (PK-like) 7 122 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19187g00001 Trme-Chr19187 342 831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19187g00001 1 125 Receptor kinase-like Gene Family AT1G53430 53.600 6.52e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme19187g00001 Pkinase 4.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19187g00001 - - gmx:100813945 224.557