Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme191879g00001 TGGCTTCTTCGTGTTTCAGCTCCGGCTGAAGAAGGTAGTTATGAATGTCTCGGTCTTCCACCTATTGCTTCTAATGAACCGATTTTAGGTTTAATTTGGGAACAAATTGCGATTCTTCATAATGGATCGTTTGATGATCGATCTGATGCGGCTGCTTCTTTGGTTTCGCTTGTTCGTGATAATGATCGGAATGGGAAATTGATTATTGAAGAAGGTGGTGTTGGTCCTTTGTTGAAACTTTTGAAAGAAGGTAAAAAAGAAGGTCAAGAAAATGCTGCTAAAGCTATTGGACTTTTAGGTCGTGATGCTGAAAGTGTTGAGGTTATGATTCATGCTGGTGTTTGTTCTGTTTTCGCGAAGATTCTTAAAGAAGGTCCTATGAAAGTTCAAGCTGTTGTAGCTTGGGCTGTTTCTGAACTTGTTTCTAA 428 0.3949 WLLRVSAPAEEGSYECLGLPPIASNEPILGLIWEQIAILHNGSFDDRSDAAASLVSLVRDNDRNGKLIIEEGGVGPLLKLLKEGKKEGQENAAKAIGLLGRDAESVEVMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELVS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme191879g00001 142 SMART arm_5 60 101 IPR000225 GO:0005515
Trme191879g00001 142 SMART arm_5 102 142 IPR000225 GO:0005515
Trme191879g00001 142 Gene3D - 24 142 IPR011989 -
Trme191879g00001 142 SUPERFAMILY ARM repeat 36 141 IPR016024 -
Trme191879g00001 142 PANTHER ARMADILLO REPEAT ONLY 4 1 141 - -
Trme191879g00001 142 Pfam Armadillo/beta-catenin-like repeat 66 98 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme191879g00001 Trme-Chr191879 28 455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme191879g00001 36 140 U-box Gene Family AT1G71020 30.189 9.80e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme191879g00001 - - vvo:131640749 252.292