Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme191870g00001 ATGATGAATTTTGTTAAGAAGAATGGTGAAGTGAGATTACCTCCAGGGTTCCGTTTCCACCCAACCGATGAAGAACTTGTTGTTCAATATTTGAAGCGTAAGGTCTTCTCTTTACCCTTACCCGCTTCCATCATTCCTCAGGTTGATCTTTGCAAGTCTGATCCATGGGATTTACCAG 178 0.4213 MMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSLPLPASIIPQVDLCKSDPWDLP 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme191870g00001 59 Pfam No apical meristem (NAM) protein 14 59 IPR003441 GO:0003677|GO:0006355
Trme191870g00001 59 PANTHER NAC TRANSCRIPTION FACTOR 56 13 58 - -
Trme191870g00001 59 SUPERFAMILY NAC domain 8 59 IPR036093 GO:0003677|GO:0006355
Trme191870g00001 59 ProSiteProfiles NAC domain profile. 13 59 IPR003441 GO:0003677|GO:0006355
Trme191870g00001 59 Gene3D NAC domain 22 59 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme191870g00001 Trme-Chr191870 9 186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme191870g00001 7 59 NAC Transcription Factor Family AT5G13180 83.019 8.65e-28 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme191870g00001 NAM 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme191870g00001 - - zju:107435239 110.923