Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19133g00001 ACGGAAGAAGGTTTTACTGCCAGGGTTTCTGAATTATGGAATACTCGACCTCAAGTTGCAACGACTGGAACATGTTGTTTGGTTGGAGTGATTTTTCAGCAGACGCTTTTTGTGGCGAATTTAGGAGATTCCCGTGTTGTTTTGGGAAAGAAAGTTGGGAATACTGGTGGGGTTGCGGCGATTCAACTGTCTACGGAACATAATGCAAATCTTGAGCCTGTTAGACATGAGCTTAAAGAGTNACACCCTCATGATCCCCAGATTGTTGTCCTCAAGCATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTGTTGTGTTTTCCTCATTTCATGCTATGTATTCTTATTCGCACGACGCAGACTCGTTTTCTTCTGCATTATTGTCGCCAGAAATTCGTCCAAAGTTCCTAA 412 0.4296 TEEGFTARVSELWNTRPQVATTGTCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGVAAIQLSTEHNANLEPVRHELKEXHPHDPQIVVLKHGVWRVKGIIQVVVFSSFHAMYSYSHDADSFSSALLSPEIRPKFL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19133g00001 137 Pfam Protein phosphatase 2C 18 72 IPR001932 -
Trme19133g00001 137 SUPERFAMILY PP2C-like 11 104 IPR036457 -
Trme19133g00001 137 ProSiteProfiles PPM-type phosphatase domain profile. 1 137 IPR001932 -
Trme19133g00001 137 PANTHER PROTEIN PHOSPHATASE 22 104 IPR015655 GO:0004722|GO:0006470
Trme19133g00001 137 Gene3D - 1 130 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19133g00001 Trme-Chr19133 842 1384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19133g00001 1 104 PP2C-type Phosphatase Gene Family AT3G17090 75.962 9.34e-51 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19133g00001 K01102 - vvo:131642354 202.216