Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19129g00001 ATGACCTTTACTTATGAAGAGTTGTCCGCTGCTACAAACAATTTTGACAACAATGCTCAAATTGGACAAGGAGGCTATGGGAAGGTTTACAAAGGTATTCTTTCTAATGGCACTGTGGTTGCCATAAAACGTGCACAACAAGGATCATTACAAGGTGAGAAGGAATTTCTTACAGAAATATCAATACTGTCAAGGATACATCATCGCAATCTTGTGGCTCTTATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCCAATGGCACACTAAGGGACCACCTTTCTGGTACATCAGAAAAACCTTTGACTTTTGCTATGAGATTGAAGATAGCATTAGAGTCAGCTAAAGGTCTCATGTACCTACACACAGAAGCAGATCCTTCAATATTTCACCGAGATGTAAAGTCGAGCAACATATTATTGGACTCTAAATTCACTGCAAAAGTAGCAGACTTTGGACTTTCACGGCTTGCGCCAGTTCCAGATGTTCAAGGAATTGTACCTGGTCATGTATCC 534 0.3989 MTFTYEELSAATNNFDNNAQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEISILSRIHHRNLVALIGYCDEEGEQMLVYEFMSNGTLRDHLSGTSEKPLTFAMRLKIALESAKGLMYLHTEADPSIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVPDVQGIVPGHVS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19129g00001 178 Pfam Protein tyrosine and serine/threonine kinase 18 163 IPR001245 GO:0004672|GO:0006468
Trme19129g00001 178 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 168 - -
Trme19129g00001 178 ProSiteProfiles Protein kinase domain profile. 15 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19129g00001 178 SUPERFAMILY Protein kinase-like (PK-like) 2 168 IPR011009 -
Trme19129g00001 178 SMART serkin_6 15 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19129g00001 178 FunFam Leucine-rich repeat protein kinase family protein 1 90 - -
Trme19129g00001 178 Gene3D Transferase(Phosphotransferase) domain 1 91 173 - -
Trme19129g00001 178 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Trme19129g00001 178 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Trme19129g00001 178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19129g00001 Trme-Chr19129 1 1309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19129g00001 3 178 Receptor kinase-like Gene Family AT5G01950 67.045 2.42e-82 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme19129g00001 PK_Tyr_Ser-Thr 1.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19129g00001 - - vvo:131621470 329.717