LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme19114g00001	ATGGATAAACCAAGTACTTCTAGGGCTATTGTTGTGTCTTCTAAAGGGGATGATAAGGGCGATGTGCAAAAGAAGAAGAAACCGATGGATGTGCAACCCACCGCTGATTTAAGTGCGCATTTCGCTACCGATAAACAGTTTACGACGAGGGAAAAATTCAAAGATTGGGCTGATGTTGTAGCAAATAACTTGGGGTTTACCACGGTGATCTTGAAGTCCGACAATGGGAATAACAAAAGAAATCCGTTTGTTACGCTCGGGTGTCAAAGAAATGGCGAGAAAAAGGCCTACGTGAACAAGAAACGGGAAGCCACGACTACATTAAAATGTGGTTGTCTGTTTATGGTAAGGAGTTATCACTTGAAGTCTGGTGGGTGGACTGTTAGTGTCCTAAATGGGACGCACAATCACGTAATGGCGCAAAGGCAAGAAGGTCACATATATGCCGAGCGGCTTGAACCAGAGGAGATTGAATTGGTGCGCGAGATGACGAAAAACAGAGCACCCCCCAGAAATATTTTATCAACTGTTAGGAGGAAATATCCGAGTACCTGGACGACTATCAAACACATATACAATTTGCGTCAGAGATTGAGACTGGAGGTCCGGGGGGAAAGAACAGAGATGCAACAACTTTTGAAGTGTTTGAGTGGAGGTAAGTACACTTACAACACTAGGTTGTGTAGAGACACCGAAACTATAAGTGATATATTTTTTGCCCATCCCGAATCGATTAAATTGTTCAATCTTTTCCACATTGTGCTTGTGATGGAATCAACATACAAGACAAATAAATATGGGTTTCCATTGCTTGAGTTTGTCGGTAACACTTCGACCGAGCAGACGTTCTCAGTTGGTTTTGCTTTTATGACGGCAGAAAAGGAGGATCACTTTATATGGGCTTTACAGAAGTGTCGTGATCTTCTCAGATGTGCAGATGATGTGAAGGTAGTTGTGACTGACCGGGAAGGTGCACTAATGAATGCTGTTGAAAAAGTTTTTCCTAAAGCCACTGATTTACTTTGTCG	1028	0.427	MDKPSTSRAIVVSSKGDDKGDVQKKKKPMDVQPTADLSAHFATDKQFTTREKFKDWADVVANNLGFTTVILKSDNGNNKRNPFVTLGCQRNGEKKAYVNKKREATTTLKCGCLFMVRSYHLKSGGWTVSVLNGTHNHVMAQRQEGHIYAERLEPEEIELVREMTKNRAPPRNILSTVRRKYPSTWTTIKHIYNLRQRLRLEVRGERTEMQQLLKCLSGGKYTYNTRLCRDTETISDIFFAHPESIKLFNLFHIVLVMESTYKTNKYGFPLLEFVGNTSTEQTFSVGFAFMTAEKEDHFIWALQKCRDLLRCADDVKVVVTDREGALMNAVEKVFPKATDLLCR	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme19114g00001	343	MobiDBLite	consensus disorder prediction	14	31	-	-
	Trme19114g00001	343	MobiDBLite	consensus disorder prediction	1	31	-	-
	Trme19114g00001	343	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	41	343	IPR031052	GO:0006355
	Trme19114g00001	343	Pfam	MULE transposase domain	254	342	IPR018289	-
	Trme19114g00001	343	Pfam	FAR1 DNA-binding domain	61	139	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme19114g00001	Trme-Chr19114	274	1301	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Trme19114g00001		MULE	1.1e-21	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme19114g00001	-		-	tpra:123922220	347.436