Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19112g00001 AATTTGGTTGGAAAAGGTGGTCATGCTGAAGTATACAAAGGAAAGTTATCAAATGGTCAAGTTGTAGCAGTAAAGAGACTAATGAATGACGACAAAGAGTTTGCCGATAGAGCTGGCGATTTCTTGACAGAGCTAGGAATCATTGCACACATAAACCATCCAAACGCTACACGTCTTGTTGGATTCGGTATCGATAAAGGGCTCTTCTTCGTCCTACAATTAGCTCAACACGGAAGCCTTTCTTCTTTGCTATTCGGTTCTGAATGCTTAGAGTGGAAGATAAGGTACAAGGTAGCTATTGAAGTTGCAG 310 0.4129 NLVGKGGHAEVYKGKLSNGQVVAVKRLMNDDKEFADRAGDFLTELGIIAHINHPNATRLVGFGIDKGLFFVLQLAQHGSLSSLLFGSECLEWKIRYKVAIEVA 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19112g00001 103 SUPERFAMILY Protein kinase-like (PK-like) 1 103 IPR011009 -
Trme19112g00001 103 Pfam Protein tyrosine and serine/threonine kinase 3 103 IPR001245 GO:0004672|GO:0006468
Trme19112g00001 103 Gene3D Transferase(Phosphotransferase) domain 1 1 103 - -
Trme19112g00001 103 ProSitePatterns Protein kinases ATP-binding region signature. 3 25 IPR017441 GO:0005524
Trme19112g00001 103 ProSiteProfiles Protein kinase domain profile. 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19112g00001 103 PANTHER OS08G0249100 PROTEIN 1 103 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19112g00001 Trme-Chr19112 978 1385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19112g00001 1 103 Receptor kinase-like Gene Family AT1G53420 38.889 1.55e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme19112g00001 PK_Tyr_Ser-Thr 2.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19112g00001 - - gmx:100794225 179.489