Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme191067g00001 ATGGTCATTTCAATTCAAGTTTTGAGAGAAGTTACAAACAATTTTAGCGATGAGAACATATTGGGGAAGGGAGGTTTTGGCACTGTATACAAAGGAGAATTGGACGATGGAACAAAGATTGCGGTTAAAAGGATGCAATCTGAAATGGTTGGTGACAAAGGGCTGAATGAGTTCAAATCTGAAATTGCGGTTCTTACTAAAGTTCGACACAGGCATTTGGTTGCACTCCACGGCTATTGCTTGGAGGACAATGAGAAACTTCTTGTCTATGAATACATGCCTCAGGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGACGGGTCAAAACCGCTTGAATGGAAGAGAAGGCTCTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATG 400 0.4175 MVISIQVLREVTNNFSDENILGKGGFGTVYKGELDDGTKIAVKRMQSEMVGDKGLNEFKSEIAVLTKVRHRHLVALHGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLEWKRRLSIALDVARGVEYLH 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme191067g00001 133 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Trme191067g00001 133 Pfam Protein tyrosine and serine/threonine kinase 19 133 IPR001245 GO:0004672|GO:0006468
Trme191067g00001 133 SUPERFAMILY Protein kinase-like (PK-like) 3 133 IPR011009 -
Trme191067g00001 133 Gene3D Transferase(Phosphotransferase) domain 1 93 133 - -
Trme191067g00001 133 FunFam receptor protein kinase TMK1 1 92 - -
Trme191067g00001 133 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Trme191067g00001 133 PANTHER OSJNBA0070M12.3 PROTEIN 1 133 - -
Trme191067g00001 133 ProSiteProfiles Protein kinase domain profile. 15 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme191067g00001 133 SMART tyrkin_6 15 133 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme191067g00001 Trme-Chr191067 29 428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme191067g00001 3 133 Receptor kinase-like Gene Family AT5G39000 53.030 6.74e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme191067g00001 PK_Tyr_Ser-Thr 9.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme191067g00001 K00924 - thj:104805093 233.802