Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19103g00001 ATGAATATCGAAGAGTCTGTGCGCAAGCAGATAGCTAAAGAGCTGAAAATTAATCAAGCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGATAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCATGGCTGATCTTCTGAACAAAGTTAAAACAATTCCGGAGCCTTATCTTTCTGCCATCTGCGAAGTTAAGATTACTGATTTTGGTGTTAGTGCAATTATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGGATCAATGGAAGCCAACGTGGTTACAACTACAAGAGTGATATATGGAGTTTGGGACTAATATTGCTCGAGTGTGCTTTGGGGAGGTTTCCATATACACCACCAGATCAAAGTGAAAGATGGGAAAGTATATTTGAGCTTATTGAAACTATTGTCGACAAACCTCCTCCTACTCCTCCATCTGAACAATTTTCTGCAGAATTTTGCTCATTTATCTCTGCATGTCTACAGAAAGACCCGGCAAACAGACTGTCAGCTCAGGAACTTATG 579 0.3955 MNIEESVRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSMADLLNKVKTIPEPYLSAICEVKITDFGVSAIMENTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPPDQSERWESIFELIETIVDKPPPTPPSEQFSAEFCSFISACLQKDPANRLSAQELM 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19103g00001 193 Pfam Protein kinase domain 5 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19103g00001 193 Pfam Protein kinase domain 71 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19103g00001 193 Gene3D Transferase(Phosphotransferase) domain 1 65 193 - -
Trme19103g00001 193 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Trme19103g00001 193 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 70 - -
Trme19103g00001 193 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19103g00001 193 SUPERFAMILY Protein kinase-like (PK-like) 5 193 IPR011009 -
Trme19103g00001 193 Coils Coil 185 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19103g00001 Trme-Chr19103 68 1363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19103g00001 1 193 MAP Kinase Kinase Gene Family AT4G29810 59.111 1.15e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trme19103g00001 Pkinase 1.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19103g00001 K20603 - gmx:100789734 350.132