Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19101g00001 ATGATGTTTAGTGCAAAACTAAGGCTAAATCTTCCTCAAGAAAAACTATGCTCCAAGGTTAAGTCTCTGATTCAAGAACTTGGTCTTAGTCATGTTGCTAGGACTAGAGTAGGAGATGGAGATGACAGGGTCCGTGGAATATCCGGTGGTGAGAGGCGCCGAGTTTCCGTTGGTGTTGAAGTCATACATGATCCAAAAGTGTTGATTCTTGATGAAGCAACTTCAGGTCTTGACAGTACCTCAGCTTTGCAAATAATTGGTATGCTTAAAGTCATGGCTGAATCTAGGGGAAGAACTATAATACTAAGTATTCATCAACCCGGGTTTGGGATAGTGAAGTTGTTCAATTCAATACTGTTGTTAGCCAATGGCAGTGTGTTACATCATGGTACTGTGGATCTGTTGGATGTGAATCTAAGGTTGATGGGTTTAGAGCTTCCTCTTCACGTTAATGTTGTTGAGTTTGCTATGGAGTCCATTGAGACCATTCAGCAACAACAACAGCAAAAAAGTCAGCAAGTTCAGGTCAAAGCACCGAAACAATTACTAGGGACAATGCGACTAAAGAAAGCTGATGATCAAGGTGAAAGTAGAAGTGGTAAGTTTACTCTACAACAGCTATTTCAACAATCCAAGGTATTTGACATAGAAAACATGAATGTAGGAATGGATTTCTCTTGTCATCATGCTAATTCTAGATTGAGAGAAACTGTGATTCTTGCTCATAGGTTCTCCAAAAACATAATTCGTACAAAAGAGCTGTTTGCATTCAGGATAATTCAGATGCTGATTTCTGGGCTGATTTTGGGATCCATCTATGGTAATCTCAAAGATGGTATAGTGGGAGCAGAACAAAGGGTTGGTCTATTTGCTTTCATATTAACGTATTTGTTATCAAGCACCATTGAAGCTCTGCCAATTTTTCTGCAAGAAAGGGAGATTCTGATGAAGGAGATTTCAAGTGGGAGCTACAGAGTTTCATCGTATGCTATTGCTAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTTTATTCGCAGTGCCACTATACTGGCTTATCGGTCTCAACCCAAATTTCACGGCATTTTTGCACTTTCTGTTGCTAATATGGCTGATTTTGTATACCGCGAATTCGGTTGTGGTATGTTTCAGTGCTCTGGTGCCTAATTTCATTGTTGGAAATTCAGTAATCGCCGGTGTCATGGGTTCATCTTTTTTGTTCTCTGGTTACTTCATATCCAATCATGAAATTCCGAA 1265 0.3976 MMFSAKLRLNLPQEKLCSKVKSLIQELGLSHVARTRVGDGDDRVRGISGGERRRVSVGVEVIHDPKVLILDEATSGLDSTSALQIIGMLKVMAESRGRTIILSIHQPGFGIVKLFNSILLLANGSVLHHGTVDLLDVNLRLMGLELPLHVNVVEFAMESIETIQQQQQQKSQQVQVKAPKQLLGTMRLKKADDQGESRSGKFTLQQLFQQSKVFDIENMNVGMDFSCHHANSRLRETVILAHRFSKNIIRTKELFAFRIIQMLISGLILGSIYGNLKDGIVGAEQRVGLFAFILTYLLSSTIEALPIFLQEREILMKEISSGSYRVSSYAIANGLVYLPFLLILAILFAVPLYWLIGLNPNFTAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVMGSSFLFSGYFISNHEIP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19101g00001 421 Gene3D - 1 187 IPR027417 -
Trme19101g00001 421 Pfam ABC-2 type transporter 105 175 IPR043926 GO:0140359
Trme19101g00001 421 Pfam ABC-2 type transporter 238 421 IPR013525 GO:0016020|GO:0140359
Trme19101g00001 421 Pfam ABC transporter 19 75 IPR003439 GO:0005524
Trme19101g00001 421 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 421 - -
Trme19101g00001 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 135 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19101g00001 Trme-Chr19101 56 1320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19101g00001 35 135 Calmodulin-binding Proteins AT2G36910 32.075 7.53e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19101g00001 K05681 - gmx:121172640 597.43