Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19091g00001 GTCAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTTGAGAGGGCTTTACGTGTCCTTGATGGTGCCATTCTTGTTTTTTGTAGTGTTGGTGGGGTCCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAAAAGATATGAGGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGAATGGGAGCGGATCCGTGGAAAGTTTTAAATCAG 222 0.4234 VNIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMKRYEVPRLAFINKLDRMGADPWKVLNQ 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19091g00001 74 Pfam Elongation factor Tu GTP binding domain 1 72 IPR000795 GO:0003924|GO:0005525
Trme19091g00001 74 Gene3D - 1 26 IPR027417 -
Trme19091g00001 74 Gene3D - 27 74 IPR027417 -
Trme19091g00001 74 NCBIfam small GTP-binding protein domain 1 65 IPR005225 GO:0005525
Trme19091g00001 74 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 74 - -
Trme19091g00001 74 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 74 IPR000795 GO:0003924|GO:0005525
Trme19091g00001 74 PRINTS GTP-binding elongation factor signature 18 29 IPR000795 GO:0003924|GO:0005525
Trme19091g00001 74 PRINTS GTP-binding elongation factor signature 54 63 IPR000795 GO:0003924|GO:0005525
Trme19091g00001 74 PRINTS GTP-binding elongation factor signature 2 12 IPR000795 GO:0003924|GO:0005525
Trme19091g00001 74 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 74 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19091g00001 Trme-Chr19091 89 310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19091g00001 1 63 Eukaryotic Initiation Factors Gene Family AT1G56070 46.032 5.36e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19091g00001 K02355 - pop:18094001 147.132