Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme190845g00001 ATGGATGTTCCTCAAGATGCTTTTAGGTTGGTAGTGGCAAAAATTTCGGAATGTGCTCGTGACATGGTTAAGACACATAAGAATACAAGGATTCTTCCTATTCGGGTCAATCTTGTCATTACAAGGGCTAGCGAAGATGAAAGTGATGAAGATGGAAGTGATGAAAGTATTGAAAGCGATGAAGCKGAAAARTCATGTGTTGAGGGATCAGAGACAATGAAAGTTGAAATAGAGAAAAAYTGTGCGATTTGTTTTGAAAACTTTAATTTCAATGTTGGAGTTCCTATGCCATGTATGCACGTGTTTCATATAAAATGTATCCGTGATTGGTTAGAGAAAGGCAATACTTGTCCTTTGTGTAGGTTTAAATTGCCCACTACTTAG 384 0.3698 MDVPQDAFRLVVAKISECARDMVKTHKNTRILPIRVNLVITRASEDESDEDGSDESIESDEAEKSCVEGSETMKVEIEKNCAICFENFNFNVGVPMPCMHVFHIKCIRDWLEKGNTCPLCRFKLPTT 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme190845g00001 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 127 IPR013083 -
Trme190845g00001 127 MobiDBLite consensus disorder prediction 43 66 - -
Trme190845g00001 127 Pfam Ring finger domain 80 121 IPR001841 -
Trme190845g00001 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 58 125 - -
Trme190845g00001 127 SUPERFAMILY RING/U-box 80 125 - -
Trme190845g00001 127 SMART ring_2 81 120 IPR001841 -
Trme190845g00001 127 ProSiteProfiles Zinc finger RING-type profile. 81 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme190845g00001 Trme-Chr190845 57 440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme190845g00001 46 126 C3H Transcription Factor Family AT5G01980 34.694 1.63e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme190845g00001 - - cam:101499491 135.191