Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19083g00001 ATGGCTGGAATTGGAAAGACAACTATTGCGTCTGTCTTGTATGATAGAATATCCTCTCAGTTTGATGCAAGCTGTTTTATTGAGAATGTAAGCAAAATCTATCGAGATGGTGATGCTATTGCTGTACAGAAACAAATCCTTCGCCAAACCGTAGATGAAATAAATCTAGAGACATACAGCCCTTCTGAAATATCTGGAATTGTACGTAAAAGAATGTGCAACAGAAAGTTTCTTGTAGTTCTTGACAATGTTGATATATTAGAGCAAGTGGAAGAATTGGCTATAAATCCTAGATTGCTTGGTACAGGAAGTAGAATGATCATTACAACTAGGAATGCGCATATTCTAAGAGTGTACGAAGAACAGTTATCTTTATCTCATGATAGATGCGTGTCATATGAGGTTCCACTATTGAATAACAATGAGGCTTGCAAACTTTTTTATAGAAAAGCTTCCAAAGGCAAGGATCTCACTAGCGAATGTGTGAAGCTTACTAATGAGGTACTAAAATATGCTCAAGGTCTTCCATTAGCAGTTCGAGTAGTGGGTTCTTTCTTGTGTACTCGAAATGTTAGCCAGTGGGGAGATGCCATGTATAGATTGAGAAATAATCCAGATAACAAAGTTATGGATGTGCTTAAGGTAAGTCTTGAGGGATTACATTCAAATGACAAAGAAATATTTCTGCATATTGCATGTTTCTTTAAAGGGGAGAAGGAAGATTATGTGAAGCGAATTCTAGATGCTTGTGGGTTGCATCCTCATTTTGGAATTCAAAATTTGATTGAGAGGTCACTCATAACTATTAGAAATCAGAAAATTCATATGCATGAAATGTTGCAAGAATTGGGGAAGAAAATTGTTCGGCAACAGTTTCTTGATGAACCGGGATCTTGGAGTAGATTGTGGCTTTATGATGATTTCTACCATGTCATGATGACTGAAACG 948 0.3671 MAGIGKTTIASVLYDRISSQFDASCFIENVSKIYRDGDAIAVQKQILRQTVDEINLETYSPSEISGIVRKRMCNRKFLVVLDNVDILEQVEELAINPRLLGTGSRMIITTRNAHILRVYEEQLSLSHDRCVSYEVPLLNNNEACKLFYRKASKGKDLTSECVKLTNEVLKYAQGLPLAVRVVGSFLCTRNVSQWGDAMYRLRNNPDNKVMDVLKVSLEGLHSNDKEIFLHIACFFKGEKEDYVKRILDACGLHPHFGIQNLIERSLITIRNQKIHMHEMLQELGKKIVRQQFLDEPGSWSRLWLYDDFYHVMMTET 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19083g00001 316 SUPERFAMILY "Winged helix" DNA-binding domain 207 311 IPR036390 -
Trme19083g00001 316 Gene3D - 1 125 IPR027417 -
Trme19083g00001 316 PRINTS Disease resistance protein signature 172 186 - -
Trme19083g00001 316 PRINTS Disease resistance protein signature 71 85 - -
Trme19083g00001 316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 231 IPR027417 -
Trme19083g00001 316 Gene3D - 137 221 IPR042197 -
Trme19083g00001 316 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 311 IPR044974 GO:0006952
Trme19083g00001 316 Pfam NB-ARC domain 1 205 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19083g00001 Trme-Chr19083 73 1020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19083g00001 1 303 WRKY Transcription Factor Family AT5G45050 33.987 2.50e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19083g00001 - - vvo:131643801 509.605