Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme19078g00001 | ATGCGCTCCACTTTGTTTAACATGCTAGGTTATGTTACTCATCGTAAAGCTGAGAGCAAATCAAAGGCAGAGAAGAATCAAGCAATGGAGCACGCTATGAGCGAGAATTCCTGTCAATTATGTGCTGTAGAGAAGCTTACATTTGAACCACCACCTATTTATTGCACAACATGTGGGGTTCGCATCAAAAGAAACAATATGTACTATACCATGGGTACTGGTGATACTCGGCATTATTTTTGTATCCCATGCTATAATGATGCTCGTACAGAACACATTGTTGTTGATGGAACTCCCATTGCTAAGTCAAGATTGGAAAAGAAGAAGAATGATGAGGAAACTGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCTTGGCAGCACCAAATATGTGCCTTGTTTAATGGAAGAAGAAATGATGGTGGACAAGCTGAATACACTTGCCCTAACTGCTACATTGAAGAGGTAGAACGAGGAGAGCGCATGCCATTACCCCAAAGTGCTGTTCTTGGAGCAAAGGATTTACCGAGAACTATTCTTAGTGACCATATAGAACAACGATTATTTAAGCGGCTAAAACACGAAAGACAAGAGAGAGCAAGGTTTCATGGGAAAACCTATGACGAGAAGGAGAAGTTGAGGGAGATTTGTCTTGAGTTTGGAAAGAAAATTTGGCGGGAGAGTTCTAG | 692 | 0.4118 | MRSTLFNMLGYVTHRKAESKSKAEKNQAMEHAMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNDARTEHIVVDGTPIAKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIEEVERGERMPLPQSAVLGAKDLPRTILSDHIEQRLFKRLKHERQERARFHGKTYDEKEKLREICLEFGKKIWRESS | 230 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme19078g00001 | 230 | ProSiteProfiles | CBP/p300-type histone acetyltransferase (HAT) domain profile. | 170 | 230 | IPR031162 | GO:0004402 | |
| Trme19078g00001 | 230 | PANTHER | CBP/P300-RELATED | 18 | 205 | IPR013178 | GO:0004402|GO:0006355|GO:0016573 | |
| Trme19078g00001 | 230 | SUPERFAMILY | FYVE/PHD zinc finger | 113 | 155 | IPR011011 | - | |
| Trme19078g00001 | 230 | CDD | PHD_HAC_like | 80 | 152 | - | - | |
| Trme19078g00001 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 153 | IPR013083 | - | |
| Trme19078g00001 | 230 | Pfam | PHD-finger | 111 | 153 | IPR019787 | - | |
| Trme19078g00001 | 230 | ProSitePatterns | Zinc finger PHD-type signature. | 81 | 152 | IPR019786 | - | |
| Trme19078g00001 | 230 | Gene3D | - | 48 | 108 | IPR038547 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme19078g00001 | Trme-Chr19078 | 199 | 1337 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Trme19078g00001 | PHD | 3.2e-08 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme19078g00001 | K04498 | - | gmx:100809207 | 394.815 |