Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme19077g00001 | ATGGCTAGAGAGATGGATGAGATTTTAAGGCAGCAAATTGCTCAGACAGCCAATAGTTGCACTTCTGAGGACGGTGTTTCATTTCTTGATCATGTTATCCTTCCTCTCTATGACGTTATTTCTGCAGAAGCTGCAAACAATGATAACGGGAAGGCGCCTCATTCATCCTGGAGAAATTATGACGATTTTAATGAGCATTTCTGGTAA | 207 | 0.4106 | MAREMDEILRQQIAQTANSCTSEDGVSFLDHVILPLYDVISAEAANNDNGKAPHSSWRNYDDFNEHFW | 68 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme19077g00001 | 68 | PANTHER | LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 | 13 | 68 | - | - | |
| Trme19077g00001 | 68 | SMART | FKS1_dom1_2 | 1 | 68 | IPR026899 | - | |
| Trme19077g00001 | 68 | Pfam | 1,3-beta-glucan synthase subunit FKS1, domain-1 | 15 | 68 | IPR026899 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme19077g00001 | Trme-Chr19077 | 325 | 1215 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme19077g00001 | 1 | 68 | Cell Wall Biosynthesis | AT3G07160 | 72.973 | 7.35e-35 | 122 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme19077g00001 | K11000 | - | ccaj:109815119 | 129.798 |