Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme190223g00001 ATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTCTCAATTGCGAGTGGATGAACCTAAGCAAGATTCTGATGTGTCAAGGAATCGCAGAAATCAAAGGGAGGATGCAAATATCGGACATGCCAATGCCGATGCTGAAGGAGATAGTGAAGRGAGAAGTCCAAATGGGGGTAGAAGATTCTCGTTTCCGTGGCCTTTCAATGGATTATTTTCTTCATCATCTTCTAGTTCCAGTTCAAATGGAAATGGTACTCAATCAGAAAGAAACTGA 315 0.4286 MPCKHRFHSACILPWLELHSSCPVCRSQLRVDEPKQDSDVSRNRRNQREDANIGHANADAEGDSEXRSPNGGRRFSFPWPFNGLFSSSSSSSSSNGNGTQSERN 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme190223g00001 104 Pfam Zinc finger, C3HC4 type (RING finger) 2 25 - -
Trme190223g00001 104 MobiDBLite consensus disorder prediction 30 68 - -
Trme190223g00001 104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 55 IPR013083 -
Trme190223g00001 104 MobiDBLite consensus disorder prediction 81 104 - -
Trme190223g00001 104 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 2 48 - -
Trme190223g00001 104 ProSiteProfiles Zinc finger RING-type profile. 1 26 IPR001841 -
Trme190223g00001 104 MobiDBLite consensus disorder prediction 29 104 - -
Trme190223g00001 104 SUPERFAMILY RING/U-box 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme190223g00001 Trme-Chr190223 74 388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme190223g00001 1 32 C3H Transcription Factor Family AT1G26800 65.625 1.64e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme190223g00001 - K11982 gmx:100784876 142.51