Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme190117g00001 ATGTCTGAAAACACTACAACTTATGCATCCTCRTCATCATCGGGAAAAGTTTTGTCTGGTCGTCATCCGGTGTACCGAGGAGTGAGACGTAGGAGTAACGGAAAATGGGTATCTGAAATCCGCGAACCTAAAAAACCTAACAGAATTTGGTTAGGAACATTTCCAACACCTGAAATGGCAGCTATTGCTTATGATGTAGCTGCTCTTGCTCTTAAGG 217 0.4286 MSENTTTYASSSSSGKVLSGRHPVYRGVRRRSNGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALK 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme190117g00001 72 SMART rav1_2 24 72 IPR001471 GO:0003700|GO:0006355
Trme190117g00001 72 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Trme190117g00001 72 SUPERFAMILY DNA-binding domain 24 71 IPR016177 GO:0003677
Trme190117g00001 72 CDD AP2 25 71 IPR001471 GO:0003700|GO:0006355
Trme190117g00001 72 ProSiteProfiles AP2/ERF domain profile. 24 72 IPR001471 GO:0003700|GO:0006355
Trme190117g00001 72 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Trme190117g00001 72 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Trme190117g00001 72 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 72 - -
Trme190117g00001 72 MobiDBLite consensus disorder prediction 1 18 - -
Trme190117g00001 72 Gene3D AP2/ERF domain 24 72 IPR036955 GO:0003700|GO:0006355
Trme190117g00001 72 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme190117g00001 Trme-Chr190117 43 259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme190117g00001 20 72 AP2-EREBP Transcription Factor Family AT2G36450 87.037 2.14e-29 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme190117g00001 AP2 5.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme190117g00001 - - rcu:8288391 94.7449