Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18993g00001 TACAATGAAATTCTTGGGAAAGGAGCTTCCAAGACAGTATATAGAGCTTTTGATGAGTATGAAGGAATAGAAGTAGCATGGAATCAAGTAAAACTTTATGACTTTTTGAAAAATCCTCAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAGCACAAGAACATCATGAAGTTTTACACTTCTTGGGTTGATACTGCCAACAGACACATTAACTTTGTCACTGAGATGTTCACATCTGGGACTCTTAGACAGTACAGACTTAAACATAAAAGAGTTAACATCAGAGCTGTTAAGCATTGGTGCAGACAGATTTTGGAAGGTCTCCTCTATCTCCATAGCCATGATCCTCCTGTGATTCATAGAGATCTCAAGTGTGATAATATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATTGGTGATCTTGGCCTCGCTGCAATTCTCCGCAAATCTAATGCTGTTCATTGTGTTGGTGAGTAA 495 0.3778 YNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLKNPQDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAVHCVGE 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18993g00001 164 SUPERFAMILY Protein kinase-like (PK-like) 3 161 IPR011009 -
Trme18993g00001 164 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18993g00001 164 FunFam Probable serine/threonine-protein kinase WNK1 1 80 - -
Trme18993g00001 164 Pfam Protein kinase domain 3 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18993g00001 164 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 161 - -
Trme18993g00001 164 Gene3D Transferase(Phosphotransferase) domain 1 82 164 - -
Trme18993g00001 164 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Trme18993g00001 164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Trme18993g00001 164 SMART serkin_6 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18993g00001 Trme-Chr18993 80 1157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18993g00001 1 163 MAP Kinase Kinase Kinase AT3G22420 83.436 1.07e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trme18993g00001 Pkinase 2.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18993g00001 K08867 - rcu:8288422 330.102