Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18988g00001 ATGAAAAAAGGTGATGGCATGATTTACCTTGTAGACAATGTTCCATATTGTCCAAAACATTGCATGATTTGCCCTGTCTGTTGTACTTATACATTTCATGATTTGCAGATAACAGGGCAATACTGTCCATTGTCATTCAAAGGAAGTCCTTATTGGATGGCTCCTGAGGTTATAAAGAACTCTAAGGAATGCAGCCTCGGTGTGGATATATGGAGTCTTGGTTGCACAGTTTTGGAAATGGCTACAACTAAACCGCCTTGGTCTCAGTATGAAGGGGTTGCCGCCATGTTCAAAATTGGCAACAGCAAGGAGCTCCCAACGATCCCCGATAATCTCTCAGACGCAGGAAAAGATTTTGTTAGAAAATGTCTACAACGTAATCCACGTGATCGCCCTTCAGCAAGTGAATTATTGGACCACCCATTTGTAAAAGGTGCTGCACCTTTAGAAAGACCTATTATGGTTCCTGAAGCTTCRGACCCTGTTTCTGGAATTACACATGGAACAAAAGCTYTGGTRYGTAACCTATTTCCTACATAA 540 0.4148 MKKGDGMIYLVDNVPYCPKHCMICPVCCTYTFHDLQITGQYCPLSFKGSPYWMAPEVIKNSKECSLGVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDNLSDAGKDFVRKCLQRNPRDRPSASELLDHPFVKGAAPLERPIMVPEASDPVSGITHGTKALVXNLFPT 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18988g00001 179 Pfam Protein kinase domain 42 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18988g00001 179 SUPERFAMILY Protein kinase-like (PK-like) 43 150 IPR011009 -
Trme18988g00001 179 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 39 151 - -
Trme18988g00001 179 SMART serkin_6 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18988g00001 179 Gene3D Transferase(Phosphotransferase) domain 1 18 149 - -
Trme18988g00001 179 ProSiteProfiles Protein kinase domain profile. 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18988g00001 Trme-Chr18988 207 969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18988g00001 36 172 MAP Kinase Kinase Kinase AT1G63700 69.343 1.92e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme18988g00001 Pkinase 5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18988g00001 K20717 - gmx:100797994 249.595