Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme189689g00001 ATGGTGAGAGGAAAAACTCAAATGAAACGTATTGAGAATGCAACAAGTAGGCAGGTGACATTCTCAAAGAGGCGTAATGGTTTGCTGAAGAAAGCCTTTGAACTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTTTCTCCAAGAGGAAAACTTTATGAGTTTTCTAGCTCCTG 182 0.3846 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme189689g00001 60 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trme189689g00001 60 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 59 - -
Trme189689g00001 60 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme189689g00001 60 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme189689g00001 60 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme189689g00001 60 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme189689g00001 60 FunFam Agamous-like MADS-box protein AGL13 13 60 - -
Trme189689g00001 60 SUPERFAMILY SRF-like 3 60 IPR036879 GO:0003677|GO:0046983
Trme189689g00001 60 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Trme189689g00001 60 Gene3D - 13 60 IPR036879 GO:0003677|GO:0046983
Trme189689g00001 60 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trme189689g00001 60 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme189689g00001 Trme-Chr189689 77 258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme189689g00001 1 60 MADS-box Gene Family AT2G45660 95.000 6.80e-38 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme189689g00001 SRF-TF 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme189689g00001 - - tcc:18606424 117.857