Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18956g00001 GACATTTGTCGTCTAAAGAAAAATTGTAATTTCTTTCTGTCAGGAGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAAATGAATGACCAAGATCGTGTAGCTATACATGAAGTTATGGAACAGCAGACTGTAACTATTGCTAAAGCTGGGATCCATGCATCACTTAATGCTCGTTGCAGTGTGGTGGCAGCTGCAAATCCCATATATGGAACTTATGATCGTTCACTTACTCCAACTAAAAATATTGGACTCCCAGACTCTTTGCTTTCTCGATTTGATCTCTTGTTTATCGTGTTGGATCAAATGGATCCTGATATTGATCGCCAAATATCAGAGCACGTCCTTCGTATGCATCGATTTCGTTCTGCTATTGATGGAGGTGAGGCAGCACATGATGGGAGTGCACGATATGGAAGAGAAGAGGAAGCTGATACTGAATCATCTGTCTTTGTCAAATATAACAGAATGCTACATGGAAAGAAAACTGATAGAGGTCGCAAACGCGATACACTTACAATTAAGTTTCTTAAAAAGTATATCCATTATGCTAAGCATAGGATTCAACCTGACCTGACTGATGAGGCATCTGACCAGATTGCCACAGCATATGCTGAGCTCAGAAATGCAAATTCAAATGCGAAGACTGGAGGAACACTTCCAATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTACTGTACTTGGCGTCTATCTTTCAGATATTTGTAATATACTAA 816 0.402 DICRLKKNCNFFLSGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTESSVFVKYNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASDQIATAYAELRNANSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVLYLASIFQIFVIY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18956g00001 271 Pfam MCM AAA-lid domain 188 258 IPR041562 -
Trme18956g00001 271 Pfam MCM P-loop domain 15 131 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme18956g00001 271 Gene3D - 6 261 IPR027417 -
Trme18956g00001 271 FunFam DNA replication licensing factor MCM3 17 138 - -
Trme18956g00001 271 PRINTS Mini-chromosome maintenance (MCM) protein family signature 101 109 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme18956g00001 271 PRINTS Mini-chromosome maintenance (MCM) protein family signature 74 86 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme18956g00001 271 PRINTS Mini-chromosome maintenance (MCM) protein family signature 50 63 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme18956g00001 271 PRINTS Mini-chromosome maintenance (MCM) protein family signature 22 36 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme18956g00001 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 258 IPR027417 -
Trme18956g00001 271 ProSitePatterns MCM family signature. 30 38 IPR018525 GO:0003677|GO:0005524|GO:0006260
Trme18956g00001 271 ProSiteProfiles MCM family domain profile. 14 127 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme18956g00001 271 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 90 100 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Trme18956g00001 271 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 123 133 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Trme18956g00001 271 SMART mcm 1 265 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme18956g00001 271 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 14 258 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18956g00001 Trme-Chr18956 2 1307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18956g00001 14 207 Core DNA Replication Machinery Family AT5G46280 82.564 1.35e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18956g00001 K02541 - tcc:18596524 456.832