Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme189553g00001 ATGTATATGCGTCCACTTGGTGTTGGGTTCCTACCCACTGATGAGATTCTCGTTGGCTACTACCTTGCCAACAAGAACAGCGAAAAGGTTCAAGTTTCCAATGGATATGACCTTATTATAGAGCTTGATTTGTATGCTTATGACCCCTTTGATTTTCCATATACCTTGTTCTATTATACCATCAAGAACCAGTTGCAATTCTACTGCTTTACTGGAAAAGTTGACGAGGAAATGAGACATTGCAAGAGTGGCTTCCGAATGAAGAAGAAACATGTTCGAGACAATACTAGTGTTGGTAACGTGGTTTTGGAAAAGAAGACTCTGTTTAATTTCTACATTGGAAATTTCCCAAAGACTGCTTCTAGAACTAATT 373 0.3861 MYMRPLGVGFLPTDEILVGYYLANKNSEKVQVSNGYDLIIELDLYAYDPFDFPYTLFYYTIKNQLQFYCFTGKVDEEMRHCKSGFRMKKKHVRDNTSVGNVVLEKKTLFNFYIGNFPKTASRTN 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme189553g00001 124 Gene3D NAC domain 13 124 IPR036093 GO:0003677|GO:0006355
Trme189553g00001 124 Pfam No apical meristem (NAM) protein 5 118 IPR003441 GO:0003677|GO:0006355
Trme189553g00001 124 ProSiteProfiles NAC domain profile. 4 124 IPR003441 GO:0003677|GO:0006355
Trme189553g00001 124 SUPERFAMILY NAC domain 3 119 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme189553g00001 5 69 NAC Transcription Factor Family AT1G32510 38.462 1.83e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme189553g00001 NAM 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme189553g00001 - - vvo:131641773 138.658