Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18912g00001 AAACCAGCTTTAGATTGGAATGCAAGAAAGAGGATAGCAATTGGAGCTGCAAGGGGACTTTTGTATCTTCATGAACAATGTGATCCAAAGATAATACATAGAGATGTAAAGGCTGCCAATGTGCTTCTTGATGACGACTATGAGGCTATCGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGATCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGTACTGTTGGGCACATTGCTCCGGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATATGGATTCGGCATTCTCTTGTTAGAGCTTATAACTGGAATGACAGCTCTTGAGTTCGGGAAAACCTTGAATCAAAAAGGTGCTATGCTTGAATGGGTTAGGAAAATACAGCAAGAAAAGAAAGTTGAAGTGTTGGTGGACAAAGAACTAGGGAGCAACTATGATAGAATTGAGGTTGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAATATTTGACAGCTCACCGTCCAAAAATGTCGGAAGTGGTCCGAATGCTTGAAGGAGATGGACTTGCTGAGAAGTGGGCATCAACACATAATTATGGTAACAACTGCTGGAGCCATAGTCACAGCAACAGTAGTAGCAATAGCTCATCTCGTCCTACCTCTACTTCAAAACATGATGACAATAATGTTCATGATCGTTCTGGCATG 699 0.4292 KPALDWNARKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDDYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVYGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQQEKKVEVLVDKELGSNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASTHNYGNNCWSHSHSNSSSNSSSRPTSTSKHDDNNVHDRSGM 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18912g00001 233 SMART serkin_6 6 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18912g00001 233 SUPERFAMILY Protein kinase-like (PK-like) 3 219 IPR011009 -
Trme18912g00001 233 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 191 - -
Trme18912g00001 233 MobiDBLite consensus disorder prediction 202 220 - -
Trme18912g00001 233 MobiDBLite consensus disorder prediction 202 233 - -
Trme18912g00001 233 Pfam Protein kinase domain 8 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18912g00001 233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
Trme18912g00001 233 FunFam Somatic embryogenesis receptor-like kinase 1 1 200 - -
Trme18912g00001 233 Gene3D Transferase(Phosphotransferase) domain 1 1 200 - -
Trme18912g00001 233 ProSiteProfiles Protein kinase domain profile. 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18912g00001 Trme-Chr18912 247 1391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18912g00001 1 224 Receptor kinase-like Gene Family AT5G16000 72.566 3.20e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme18912g00001 Pkinase 2.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18912g00001 - - gmx:100797186 392.119