Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18909g00001 ACAACATGTGGAGTTGGAGCTGCACTCATCCTAGCAACAGTTGCATTTCTTCTATACAAACGCCACAAACGCATATTANNNNNTNNNNNNNNNNTAGCCAAAGAGCGTGAAGGAATTCTAAACGCAAGTGGTGGAGGAAAAGCCGCCAAACTTTTCAGCGGCAAAGAGATCAAAAAAGCCACAAATGATTTCTCAGCCGATCGCCTCCTTGGCGTTGGCGGCTATGGTGAAGTCTACAAAGGCATTCTTTCAGATGGAACCAATGTAGCTGTTAAATGTGCTAAACTCGGAAACCCAAAAGGCACTGACCAAGTCCTCAATGAAGTTCGCATATTATGCCAAGTTAACCATAGAAACCTCGTTGGTTTACTTGGTTGCTGCGTCGAATTGGAGCAACCAATTTTGGTTTATGAGTTCATAGAAAATGGGACCCTTCTTGATCATCTAACAGGTCAAATGCCAAAGGGTCGTGCTTCACTTAATTGGAACAATCGTCTTCACATTGCTCGTGATACTTCTGAAGGTCTTTCTTACCTTCACTTCATGGCAGTACCACCAATTTACCATAGAGATGTTAAATCAAGCAACATTCTTCTAGATTTCAAGATGAACGCTAAGGTTTCGGATTTCGGGTTATCTCGTTTGGCTCAAAC 653 0.4165 TTCGVGAALILATVAFLLYKRHKRILXXXXXXAKEREGILNASGGGKAAKLFSGKEIKKATNDFSADRLLGVGGYGEVYKGILSDGTNVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLLDHLTGQMPKGRASLNWNNRLHIARDTSEGLSYLHFMAVPPIYHRDVKSSNILLDFKMNAKVSDFGLSRLAQT 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18909g00001 218 Pfam Protein tyrosine and serine/threonine kinase 67 216 IPR001245 GO:0004672|GO:0006468
Trme18909g00001 218 SMART serkin_6 64 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18909g00001 218 FunFam Wall-associated receptor kinase-like 20 27 139 - -
Trme18909g00001 218 Gene3D Transferase(Phosphotransferase) domain 1 140 218 - -
Trme18909g00001 218 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Trme18909g00001 218 SUPERFAMILY Protein kinase-like (PK-like) 49 216 IPR011009 -
Trme18909g00001 218 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Trme18909g00001 218 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 216 IPR045274 GO:0007166
Trme18909g00001 218 ProSiteProfiles Protein kinase domain profile. 64 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18909g00001 218 Gene3D Phosphorylase Kinase; domain 1 28 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18909g00001 Trme-Chr18909 1 807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18909g00001 34 215 Receptor kinase-like Gene Family AT5G02070 66.484 2.67e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme18909g00001 PK_Tyr_Ser-Thr 1.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18909g00001 - - gmx:100305415 378.637