Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1889g00001 AATTCACCAAACCGTTATGTTGGAATTTGGTACAAAAACATTCAAGTTAAAACAGTTGTTTGGGTCGCGAATCGTGATAATCCGATCAAAGATAACTCGAGCAAGTTGATCATAAATAGACAAGGAAATCTTGTTCTTCTCAATAATAGTCAGTCTCTTTTATGGTCAACAAATGCAACAAAGAAAGCTTCAATTCCAATTGTGCAGCTTTTGAACAATGGAAATTTAGTTCTTCGAGACGAGAAAGACAATGAAGGTGATGAAGAAGAAGAAGACGGTTTCTTGTGGCAGAGTTTTGATTATCCTTGTGATACATTATTACCAGGAATGAAGTTGGGATGGGACAAGAAAACCGGTATTAATAGACGTCTCACTGCATGGAAAAATTGGGAAGATCCGTCTTCAGGTGAATTTACTAACTCAATTAAACTTAACAAAAATCCTGAAATTGTGATTTGGAAAGGTTCTGTTGAATTTTATAGAGCAGGACCTATGATTGGTATTATGAATAGTGCTGTTATGTCTAAAGGAGTTTTTGGGTTGAGGCCTAATCCACTTTATAATTATACATTTGTATTTAATGAAGAGGAAGTGTATTATATGTACAACCTTAAGAATAGTTCTGTGATTTCCATAGTTGTTTTGAACCAAACGCTTTTGGTTCGTCAACGCCTAACTTGGATTCCGGAAACTAAAACATGGAATCTTTACCAGAATTTGCCACAAGACAGTTGTGATGCTTATAATGTTTGCGGTGCCAACGCAAACTGTGTCATTGGCGAATCACCAATTTGTCAGTGCTTAGATGGGTTTACGCCAAAATCACCCAATCGGTGGAATGCAATGGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNATAGAGTTGCTAAAATGAAGTTGCCGGATACTACAAATTATTGGCTTAATGAAAATATGACGCTCGATAAATGCAAGGACAAATGTTTGCAAAATTGTTCCTGCACGGCTTACTCAATCTTAGGCGCAGATGATGGTAACAGCGGATGTTCCATTTGGTTTGATGGTCTTAAAGATTTGAGAGTTTCAGAAGCTGGACAAGACTTGTATGTTCGAGCAGACGTTTCAGATACCGATGATAAACATGGGCGTATGAAAAAAGTAATTGTTGCAGTTTCAATCAGTGCTTCATTAGTCATTGTGATGCTATTAGCATTCTACATTTATAGAACAAAGTATAAAGGTAATGAGGACAAGGTAAACTCAATGTGGATGGAAGACAACAGTGAAAGTGAACATGACGATTTCGAGCTTCCTTTCTTTGATCTTGCTACAATACTAGATGCCACAAATGATTTCTCGATTGACAACAAACTCGGTGAAGGTGGTTTTGGATTGGTATACAAGGGTAAGTTGCTAGATGGCCAAGAAATTGCAGTCAAAAGACTTTCTTGGGGTTCCGGACAAGGAACGAAAGAATTTAAGAATGAAGTTATATTATGTGCTAAACTTCAACATCGAAATCTTGTTAAAGTTATTGGTTGTTGCATTGAAAAAGATGAGAAAATGCTAGTCTACGAATATATGTCAAACACAAGCCTTGATTCATTTATTTTTGGTAAGTAA 1638 0.3504 NSPNRYVGIWYKNIQVKTVVWVANRDNPIKDNSSKLIINRQGNLVLLNNSQSLLWSTNATKKASIPIVQLLNNGNLVLRDEKDNEGDEEEEDGFLWQSFDYPCDTLLPGMKLGWDKKTGINRRLTAWKNWEDPSSGEFTNSIKLNKNPEIVIWKGSVEFYRAGPMIGIMNSAVMSKGVFGLRPNPLYNYTFVFNEEEVYYMYNLKNSSVISIVVLNQTLLVRQRLTWIPETKTWNLYQNLPQDSCDAYNVCGANANCVIGESPICQCLDGFTPKSPNRWNAMXXXXXXXXXXXXXXXXXXXXXXXRVAKMKLPDTTNYWLNENMTLDKCKDKCLQNCSCTAYSILGADDGNSGCSIWFDGLKDLRVSEAGQDLYVRADVSDTDDKHGRMKKVIVAVSISASLVIVMLLAFYIYRTKYKGNEDKVNSMWMEDNSESEHDDFELPFFDLATILDATNDFSIDNKLGEGGFGLVYKGKLLDGQEIAVKRLSWGSGQGTKEFKNEVILCAKLQHRNLVKVIGCCIEKDEKMLVYEYMSNTSLDSFIFGK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1889g00001 545 CDD EGF_CA 243 275 - -
Trme1889g00001 545 Gene3D Phosphorylase Kinase; domain 1 419 532 - -
Trme1889g00001 545 SMART blect_4 1 102 IPR001480 -
Trme1889g00001 545 ProSiteProfiles EGF-like domain profile. 241 277 IPR000742 -
Trme1889g00001 545 Pfam S-locus glycoprotein domain 174 275 IPR000858 GO:0048544
Trme1889g00001 545 Pfam D-mannose binding lectin 18 128 IPR001480 -
Trme1889g00001 545 Coils Coil 282 282 - -
Trme1889g00001 545 Coils Coil 306 306 - -
Trme1889g00001 545 Gene3D - 2 99 IPR036426 -
Trme1889g00001 545 SUPERFAMILY alpha-D-mannose-specific plant lectins 19 133 IPR036426 -
Trme1889g00001 545 Pfam Protein tyrosine and serine/threonine kinase 458 542 IPR001245 GO:0004672|GO:0006468
Trme1889g00001 545 ProSiteProfiles Protein kinase domain profile. 457 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1889g00001 545 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 421 532 - -
Trme1889g00001 545 ProSiteProfiles PAN/Apple domain profile. 267 378 IPR003609 -
Trme1889g00001 545 Pfam PAN-like domain 306 363 IPR003609 -
Trme1889g00001 545 ProSiteProfiles Bulb-type lectin domain profile. 1 91 IPR001480 -
Trme1889g00001 545 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 542 - -
Trme1889g00001 545 SUPERFAMILY Protein kinase-like (PK-like) 433 544 IPR011009 -
Trme1889g00001 545 SMART ntp_6 299 377 IPR003609 -
Trme1889g00001 545 CDD B_lectin 1 102 IPR001480 -
Trme1889g00001 545 CDD PAN_AP_plant 306 376 - -
Trme1889g00001 545 ProSitePatterns Protein kinases ATP-binding region signature. 463 485 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1889g00001 Trme-Chr1889 286 2102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1889g00001 379 543 Receptor kinase-like Gene Family AT4G04500 47.929 1.29e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme1889g00001 S_locus_glycop 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1889g00001 - - gmx:100790436 680.633