Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme188954g00001 ATGATGATGCCGAAAAAATATGAAGGATATGCTGTGGGAATCGATCTTGGTACAACATATTCGTGTGTTGCAGTGTGGCATGAGCAACACAGTAGAGTGGAGATTATTCACAATGATCAAGGCAACAGAACCACACCTTCTTGTGTTGCTTTCACCGACAAACAAAGGTTGATTGGTGATGCTGCTAAGAATCAAGCTGCTACCAACCCACAAAATACTATCTTTG 226 0.4159 MMMPKKYEGYAVGIDLGTTYSCVAVWHEQHSRVEIIHNDQGNRTTPSCVAFTDKQRLIGDAAKNQAATNPQNTIF 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme188954g00001 75 PANTHER HEAT SHOCK PROTEIN 70KDA 11 75 IPR013126 GO:0005524|GO:0140662
Trme188954g00001 75 PRINTS 70kDa heat shock protein signature 10 23 - -
Trme188954g00001 75 PRINTS 70kDa heat shock protein signature 40 52 - -
Trme188954g00001 75 PRINTS 70kDa heat shock protein signature 62 70 - -
Trme188954g00001 75 Gene3D - 1 75 - -
Trme188954g00001 75 SUPERFAMILY Actin-like ATPase domain 9 75 IPR043129 -
Trme188954g00001 75 ProSitePatterns Heat shock hsp70 proteins family signature 1. 14 21 IPR018181 -
Trme188954g00001 75 FunFam heat shock 70 kDa protein-like 5 75 - -
Trme188954g00001 75 Pfam Hsp70 protein 11 75 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme188954g00001 Trme-Chr188954 21 246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme188954g00001 3 75 Calmodulin-binding Proteins AT1G56410 76.712 9.21e-33 116