Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18893g00001 ATGCATACATTGGATGATGTGGCTTTTGTTGTTGATGGCTGGGCTCTTGAGATTGCACTTAACCACTACCGTAAAGCTTTCACTGAGCTGGCAGTATTGTCAAGGACTGCTATATGCTGTCGTGTGACGCCATCTCAAAAAGCACAGCTTGTACAGATCTTAAAATCATGTGATTATAGAACGTTGGCAATTGGAGATGGAGGCAATGATGTAAGGATGATACAACAAGCAGATATTGGTGTGGGCATCAGTGGCAGAGAAGGATTGCAGGCAGCAAGAGCAGCTGATTACAGCATCGGAAAGTTTAGATTCCTAAAGAGATTAATTCTGGTTCATGGCCGGTATTCATACAACCGTACAGCATTTCTTTCCCAGTATTCTTTCTACAAGTCCTTATTGATATGCTTCATTCAAATCTT 419 0.4177 MHTLDDVAFVVDGWALEIALNHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18893g00001 139 Pfam Phospholipid-translocating P-type ATPase C-terminal 92 139 IPR032630 -
Trme18893g00001 139 NCBIfam HAD-IC family P-type ATPase 31 138 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme18893g00001 139 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 139 - -
Trme18893g00001 139 Gene3D - 1 104 IPR023214 -
Trme18893g00001 139 Pfam haloacid dehalogenase-like hydrolase 49 83 - -
Trme18893g00001 139 SUPERFAMILY HAD-like 8 119 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18893g00001 Trme-Chr18893 183 1227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18893g00001 6 139 Primary Pumps ATPases AT5G44240 94.030 1.51e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18893g00001 K01530 - gmx:100778546 265.388