Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18875g00001 GCTACTGAGACTACAATTGCAGAGAGAGGCTATATTCCACCTGACCATGGCCAGACAGGATTCAGCAGAAGGAGAGATGTCTTTGCCTTTGGGGTATTGCTTCTGGAATTGTTAACAGGAAGGAAACCATTCGATGGTGCTAGACCAAGGGAGGAGCAATATCTGGTGAAATGGGCTTCCCCTAGGCTTTGTGATAGTGCAAGTTTGGAAAAGATAGTGGATCCCAGTATGAAAACAACATTTTCATCCAAGGTTCTTTCTCATTATGCTGATATCATCTACCTCTGTATACAGCCTTCGAAACAACACCGTCCCGCAATGTCTGAAGTTGTGAGCTCTCTTATATCTTTTTCTCAAAACTTCAACTTTGCNAAGAGCGATGTAGCAGATGCTACTGAACTTTTAGAGAAGTCTTTCCGTTCAGCCAACACAGGCTTCATAAGTTCGCCAACAGCGAGCCACCTATCAGCCTGA 474 0.443 ATETTIAERGYIPPDHGQTGFSRRRDVFAFGVLLLELLTGRKPFDGARPREEQYLVKWASPRLCDSASLEKIVDPSMKTTFSSKVLSHYADIIYLCIQPSKQHRPAMSEVVSSLISFSQNFNFAKSDVADATELLEKSFRSANTGFISSPTASHLSA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18875g00001 157 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18875g00001 157 Gene3D Transferase(Phosphotransferase) domain 1 1 142 - -
Trme18875g00001 157 Pfam Protein tyrosine and serine/threonine kinase 20 114 IPR001245 GO:0004672|GO:0006468
Trme18875g00001 157 SUPERFAMILY Protein kinase-like (PK-like) 4 112 IPR011009 -
Trme18875g00001 157 PANTHER OS01G0253100 PROTEIN 8 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18875g00001 Trme-Chr18875 71 741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18875g00001 1 157 Strubbelig Receptor Gene Family AT5G06820 55.975 3.89e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme18875g00001 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18875g00001 - - mtr:11428201 218.394