Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18873g00001 TATTCATGTAACATGGCTGAGTTCATTGTAAAAGATGAGGTCAGAAAAAGTTATAATAAGAATCCTGGAATTGCTGCTGGACTTGTAAGAATGCATTTTCATGATTGCTTTATCAGAGGGTGTGATGCATCGGTACTTCTTGATTCTAGTCCCTCAAACACTGCAGAGAAAGACTCTCCAGCCAATAAACCAAGTCTGAGAGGGTTTGAAGTTATTGATAATGCCAAGGCTAAACTTGAAGAAGTATGCAAAGGAATTGTTTCATGTGCTGACATAGTTGCTTTTGCAGCAAGGGACAGTGTGGAGTTGGCTGGAGGACTTGGCTATGATGTTCCTGCAGGAAGAAGAGATGGGAAAATATCACTAGCATCAGATACAAGAACAGAATTACCTCCTCCAACTTTCAATGTTAACCAACTCACTCAACTCTTTGCAAGAAAGGGGTTAACACAAGAAGAAATGGTCACTCTCTCTGGAGCACACACCATCGGACGCTCTCATTGCTCAGCTTTCAGCAGCAGATTATACAACTTCAGCACCACTTCAAGGCAGGATCCCAGTTTACATCCCTCGTATGCAGCAATTTTGAAGAGTCAATGTCCACAAGGCAACACAAACCCAAACTTGGTTGTACCAATGGACCCTTCTAGCCCTGGAACTGCAGATGTAGGCCAGACAAGTTAA 684 0.4269 YSCNMAEFIVKDEVRKSYNKNPGIAAGLVRMHFHDCFIRGCDASVLLDSSPSNTAEKDSPANKPSLRGFEVIDNAKAKLEEVCKGIVSCADIVAFAARDSVELAGGLGYDVPAGRRDGKISLASDTRTELPPPTFNVNQLTQLFARKGLTQEEMVTLSGAHTIGRSHCSAFSSRLYNFSTTSRQDPSLHPSYAAILKSQCPQGNTNPNLVVPMDPSSPGTADVGQTS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18873g00001 227 FunFam Peroxidase 1 143 - -
Trme18873g00001 227 MobiDBLite consensus disorder prediction 203 227 - -
Trme18873g00001 227 PANTHER PEROXIDASE 25-RELATED 2 222 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 SUPERFAMILY Heme-dependent peroxidases 2 222 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 ProSitePatterns Peroxidases active site signature. 25 36 IPR019794 GO:0004601
Trme18873g00001 227 Pfam Peroxidase 10 222 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 ProSitePatterns Peroxidases proximal heme-ligand signature. 153 163 IPR019793 -
Trme18873g00001 227 CDD secretory_peroxidase 2 222 IPR033905 GO:0004601|GO:0042744
Trme18873g00001 227 ProSiteProfiles Plant heme peroxidase family profile. 1 227 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Plant peroxidase signature 67 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Plant peroxidase signature 3 22 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Plant peroxidase signature 152 164 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Plant peroxidase signature 86 96 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Plant peroxidase signature 105 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Plant peroxidase signature 212 227 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Plant peroxidase signature 27 47 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 Gene3D - 1 141 - -
Trme18873g00001 227 Gene3D Peroxidase, domain 2 142 225 - -
Trme18873g00001 227 PRINTS Haem peroxidase superfamily signature 87 104 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Haem peroxidase superfamily signature 25 39 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Haem peroxidase superfamily signature 153 168 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 PRINTS Haem peroxidase superfamily signature 105 117 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme18873g00001 227 FunFam Peroxidase 131 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18873g00001 Trme-Chr18873 182 1370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18873g00001 1 214 Peroxidase AT5G42180 53.738 1.48e-77 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18873g00001 K00430 - gmx:100779031 409.838