Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18859g00001 GGTGGTGGAATGGGCCACTCAAGGAACTGGTTTTCATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAACTCTGAATCTTTTGGGAGAAGGTGGATTTGGTTCTGTGTATAAAGGATGTTTACCCGATGGTAGAGAAATAGCGGTGAAGCAACTCAAAATTGGTGGGAGTCAAGGGGAGAGAGAATTCAAAGCTGAAGTTGACATAATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTTGGTCACTGCATTCAAGATAACAGAAAAATACTTGTCTATGACTATGTCCCTAACAACACACTTCATTTTCATCTACATGAGGAAGGTCAACCTGTGCTGGAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTTCATGAAGACTGCAATCCTCGGATTATTCACAGAGATATCAAGCCGTCAAACATTCTTTTGGATTACAACTATGAAGCTCAAGTCTCAGATTTTGGCCTAGCGAAATTAGCTCTAGATGCAAATACACATGTAACGACGCGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATACGCGTCAAGTGGAAAATTGACCGACAAGTCTGATGTATATTCTTTTGGAGTTGTGCTTTTGGAGCTCATTACCGGGCGGATGCCAGTAGATCCATCACAAATGGGAGATGAGAGTCTAGTTGAATGG 708 0.4223 GGGMGHSRNWFSYEELIKATNGFSTLNLLGEGGFGSVYKGCLPDGREIAVKQLKIGGSQGEREFKAEVDIISRIHHRHLVSLVGHCIQDNRKILVYDYVPNNTLHFHLHEEGQPVLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDYNYEAQVSDFGLAKLALDANTHVTTRVMGTFGYVAPEYASSGKLTDKSDVYSFGVVLLELITGRMPVDPSQMGDESLVEW 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18859g00001 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Trme18859g00001 236 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 8 236 IPR047117 -
Trme18859g00001 236 Gene3D Phosphorylase Kinase; domain 1 4 98 - -
Trme18859g00001 236 ProSiteProfiles Protein kinase domain profile. 23 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18859g00001 236 Pfam Protein kinase domain 24 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18859g00001 236 PIRSF ILK 5 232 - -
Trme18859g00001 236 FunFam Proline-rich receptor-like protein kinase PERK8 1 98 - -
Trme18859g00001 236 SMART serkin_6 23 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18859g00001 236 ProSitePatterns Protein kinases ATP-binding region signature. 29 51 IPR017441 GO:0005524
Trme18859g00001 236 Gene3D Transferase(Phosphotransferase) domain 1 99 236 - -
Trme18859g00001 236 SUPERFAMILY Protein kinase-like (PK-like) 7 227 IPR011009 -
Trme18859g00001 236 FunFam proline-rich receptor-like protein kinase PERK8 99 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18859g00001 Trme-Chr18859 26 1391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18859g00001 2 236 Trihelix Transcription Factor Family AT1G26150 77.966 3.26e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme18859g00001 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18859g00001 - - tpra:123889774 480.33