Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18849g00001 ATGGAAGGCATAGAGCTGTTAGAGCAGGCAGAAGCTCTAAGAGATGCAGTGAGTAGCAAGAAACATGTTATTGATGAGAAAAGTAATCAACAAAATGGCTCTGTCAAGGCTAATGGAAGCAGTAGTTCTCTAGCAGGCTACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCTGTTGAAGAAATAATGAAAGCTACTAAAACTGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGCTGCACAATCAATTGCATCTCCACTGTCAACCAGAGAAGAACTGGAAGGGGTATCAATACCAGCAACGACACCCGAAAATAGTGCTGCCTTCTCAACAACAACAACAACAACAACAATACCAACACCAGTGGCAACGTCAAAAACAACACCAACACCAGTGGCAACGACAAAAACAACACCAACACCACCGACGATGACGACAACTACAGCAACAACAAATAACATCAGCTCGGAAGAATCTCAAGGAGTTTCAGAACCGGAAGTGTGGTCTGCAGTGCAGGAAAGAGCACTAGTTCAAGCTTTAAAAACCTTTCCAAAGGAAGCTAACCAGAGATGGGAACGAGTATCTGCAGCTGTACCTGGGAAGACTGTGAACCAGTGCAAGAAGAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGCTGTTTGA 804 0.3943 MEGIELLEQAEALRDAVSSKKHVIDEKSNQQNGSVKANGSSSSLAGYXXXXXXXXXXXXXXXXXXXXXXXXXGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATTPENSAAFSTTTTTTTIPTPVATSKTTPTPVATTKTTPTPPTMTTTTATTNNISSEESQGVSEPEVWSAVQERALVQALKTFPKEANQRWERVSAAVPGKTVNQCKKKFAMMKENFRNKKTAV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18849g00001 267 ProSiteProfiles SANT domain profile. 206 261 IPR017884 -
Trme18849g00001 267 ProSiteProfiles Myb-like domain profile. 211 257 IPR001005 -
Trme18849g00001 267 CDD SANT 211 257 IPR001005 -
Trme18849g00001 267 Gene3D - 204 267 - -
Trme18849g00001 267 SUPERFAMILY Homeodomain-like 209 263 IPR009057 -
Trme18849g00001 267 MobiDBLite consensus disorder prediction 28 45 - -
Trme18849g00001 267 MobiDBLite consensus disorder prediction 159 193 - -
Trme18849g00001 267 SMART sant 207 259 IPR001005 -
Trme18849g00001 267 MobiDBLite consensus disorder prediction 21 48 - -
Trme18849g00001 267 FunFam Myb family transcription factor 205 265 - -
Trme18849g00001 267 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 66 266 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Trme18849g00001 267 Pfam Myb-like DNA-binding domain 210 255 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18849g00001 Trme-Chr18849 81 884 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme18849g00001 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18849g00001 K09522 - gmx:100814414 243.047