Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme188289g00001 ATGGCTTTAAGAAAATCAACTAAGCTTCCTCAAACAGCACTGATCAAACAAATCCTTAAAAGATGTTCAAGTTTAGGGAAGAAAGATGATCCTTGTTTGGATGTTCCAAAAGGTCACTTTGTTGTATATGTTGGTGAAAACAGAAGCAGGTACATTGTTCCAATTTCTTTTCTAAGTAGACCAGAGTTTCAAAACCTTTTACATCAAGCTGAAGAAGAGTTTGGATTTGATCATGATATGGGTCTCACTATTCCTTGCCAACAAGATGTTTTTGAATCTCTTACTTCCATGCTTCTCAGATAG 303 0.3564 MALRKSTKLPQTALIKQILKRCSSLGKKDDPCLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQNLLHQAEEEFGFDHDMGLTIPCQQDVFESLTSMLLR 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme188289g00001 100 Pfam Auxin responsive protein 29 98 IPR003676 GO:0009733
Trme188289g00001 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 17 97 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme188289g00001 Trme-Chr188289 117 419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme188289g00001 3 100 Calmodulin-binding Proteins AT4G34750 40.196 1.91e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme188289g00001 K14488 - gmx:100778552 179.104